Browse Element(s) Details


OsAffx.26816.1.S1_at

Description tigr:9633.m00935
TID=OsAffx.26816.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1072011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10700OsAffx.30350.1.S1_at1/115+5866463..5871651retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g10710NANA5+5873281..5876079hypothetical protein
LOC_Os05g10720OsAffx.26816.1.S1_at11/115+5884727..5885110hypothetical protein
LOC_Os05g10730Os.7826.2.A1_at11/115+5887293..5893730multidrug resistance associated protein 1, putative, expressed
LOC_Os05g10740Os.7826.1.S1_a_at11/115+5893355..5896224Pollen-specific protein SF21, putative, expressed
LOC_Os05g10750NANA5+5903561..5904178hypothetical protein
LOC_Os05g10760OsAffx.17654.1.S1_at10/115+5908982..5912701transposon protein, putative, unclassified, expressed
LOC_Os05g10760OsAffx.17654.3.S1_x_at9/115+5908982..5912701transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26816.1.S1_at--475--7251Chr05:5884801..5884825 (25 bp)
GTCCCGCCGCATTCAAGTCCAGAGG
LOC_Os05g10720
OsAffx.26816.1.S1_at--925--1131Chr05:5884816..5884840 (25 bp)
AGTCCAGAGGGTACAGTTTTATACG
LOC_Os05g10720
OsAffx.26816.1.S1_at--1021--6131Chr05:5884822..5884846 (25 bp)
GAGGGTACAGTTTTATACGCACCAT
LOC_Os05g10720
OsAffx.26816.1.S1_at--194--3451Chr05:5884829..5884853 (25 bp)
CAGTTTTATACGCACCATGGATGGA
LOC_Os05g10720
OsAffx.26816.1.S1_at--946--311Chr05:5884836..5884860 (25 bp)
ATACGCACCATGGATGGACCGCGCT
LOC_Os05g10720
OsAffx.26816.1.S1_at--271--9311Chr05:5884877..5884901 (25 bp)
TCCCTCCCGCTGGAGATCGATGGAG
LOC_Os05g10720
OsAffx.26816.1.S1_at--1155--6031Chr05:5884889..5884913 (25 bp)
GAGATCGATGGAGTCGCCACCGGCT
LOC_Os05g10720
OsAffx.26816.1.S1_at--1027--11Chr05:5884964..5884988 (25 bp)
ATTGGCAACCCAGCAGCCGACAAGG
LOC_Os05g10720
OsAffx.26816.1.S1_at--661--2611Chr05:5884970..5884994 (25 bp)
AACCCAGCAGCCGACAAGGAGAGAC
LOC_Os05g10720
OsAffx.26816.1.S1_at--471--7571Chr05:5885018..5885042 (25 bp)
GGGTTTCGGCCGGACTGGCATCCTC
LOC_Os05g10720
OsAffx.26816.1.S1_at--103--8511Chr05:5885033..5885057 (25 bp)
TGGCATCCTCGCTGCGTGCTCTGGG
LOC_Os05g10720
Target Sequence 
GTCCCGCCGCATTCAAGTCCAGAGGGTACAGTTTTATACGCACCATGGATGGACCGCGCTCACCGACGAGCCGTGCTCCC
TCCCGCTGGAGATCGATGGAGTCGCCACCGGCTCCGCTCGTCGTCACCCTGCCACCACCAACTGCTCCTCCACCACCTTC
ACCATTGGCAACCCAGCAGCCGACAAGGAGAGACCGCTCCCCCACTCCTGCACCACCGGGTTTCGGCCGGACTGGCATCC
TCGCTGCGTGCTCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis