Browse Element(s) Details


OsAffx.26828.1.S1_x_at

Description tigr:9633.m00987
TID=OsAffx.26828.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1124011/11hypothetical protein
LOC_Os10g358001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11200OsAffx.4298.1.S1_at9/115+6309137..6310766hypothetical protein
LOC_Os05g11210OsAffx.26826.1.S1_at11/115+6312419..6313220expressed protein
LOC_Os05g11220NANA5+6318766..6318978hypothetical protein
LOC_Os05g11230OsAffx.26827.1.S1_at10/115+6321674..6322549hypothetical protein
LOC_Os05g11240OsAffx.26828.1.S1_x_at11/115+6324232..6325670hypothetical protein
LOC_Os05g11240OsAffx.26828.1.S1_at11/115+6324232..6325670hypothetical protein
LOC_Os05g11250Os.56031.1.S1_at11/115+6328307..6329255expressed protein
LOC_Os05g11260Os.38301.2.A1_at11/115+6337424..6341719expressed protein
LOC_Os05g11260OsAffx.14635.1.S1_x_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.38301.1.S1_s_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.38301.1.S1_a_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.27133.2.S1_at5/115+6337424..6341719expressed protein
LOC_Os05g11270OsAffx.20490.1.S1_at1/115+6345492..6346607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11280NANA5+6347217..6348704transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26828.1.S1_x_at--395--5671Chr05:6324316..6324340 (25 bp)
GACATCATCCGTGTCCACCGATGGA
LOC_Os05g11240
OsAffx.26828.1.S1_x_at--1126--3551Chr05:6324318..6324342 (25 bp)
CATCATCCGTGTCCACCGATGGAAG
LOC_Os05g11240
OsAffx.26828.1.S1_x_at--1005--9211Chr05:6324329..6324353 (25 bp)
TCCACCGATGGAAGGCGACATATGA
LOC_Os05g11240
OsAffx.26828.1.S1_x_at--481--2951Chr05:6324340..6324364 (25 bp)
AAGGCGACATATGAGAGGATCATCG
LOC_Os05g11240
OsAffx.26828.1.S1_x_at--661--5052Chr10:18817815..18818190 (25 bp)
GCAGCTCCTCTACCAGTTTGACAAG
LOC_Os10g35800
OsAffx.26828.1.S1_x_at--475--6851Chr05:6324423..6324443 (21 bp)
GTTTGACAAGGACCTCGACAGTTGC
LOC_Os05g11240
OsAffx.26828.1.S1_x_at--333--5651Chr05:6325585..6325608 (24 bp)
GACAGTTGCCCACTATTCAAGGCCG
LOC_Os05g11240
OsAffx.26828.1.S1_x_at--1153--6671Chr05:6325588..6325612 (25 bp)
GTTGCCCACTATTCAAGGCCGCCTA
LOC_Os05g11240
OsAffx.26828.1.S1_x_at--412--2951Chr05:6325602..6325626 (25 bp)
AAGGCCGCCTACTGCCTTGGTGGAT
LOC_Os05g11240
OsAffx.26828.1.S1_x_at--1050--871Chr05:6325603..6325627 (25 bp)
AGGCCGCCTACTGCCTTGGTGGATT
LOC_Os05g11240
OsAffx.26828.1.S1_x_at--985--9191Chr05:6325614..6325638 (25 bp)
TGCCTTGGTGGATTGGCTAAGTCCT
LOC_Os05g11240
Target Sequence 
GACATCATCCGTGTCCACCGATGGAAGGCGACATATGAGAGGATCATCGCCACTGCCGCTGACGTCAACTCGCTCATCCT
CTCCAACCACGTGCAGCTCCTCTACCAGTTTGACAAGGACCTCGACAGTTGCCCACTATTCAAGGCCGCCTACTGCCTTG
GTGGATTGGCTAAGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26828.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis