Browse Element(s) Details


OsAffx.26881.1.S1_at

Description tigr:9633.m01264
TID=OsAffx.26881.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1448010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14450NANA5+8139946..8143251transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14460Os.47463.1.S1_x_at6/115+8146246..8149946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14460Os.14491.2.S1_x_at5/115+8146246..8149946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14470OsAffx.4334.1.S1_at9/115+8152879..8154366hypothetical protein
LOC_Os05g14480OsAffx.26881.1.S1_at10/115+8155818..8157927hypothetical protein
LOC_Os05g14490OsAffx.26882.1.S1_at9/115+8160563..8163319hypothetical protein
LOC_Os05g14500OsAffx.15781.5.S1_x_at9/115+8175033..8177652hAT family dimerisation domain containing protein
LOC_Os05g14500OsAffx.15781.4.S1_x_at9/115+8175033..8177652hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26881.1.S1_at--122--9211Chr05:8157734..8157753 (20 bp)
TGCCAGCAATGGGTATTAGGACGGT
LOC_Os05g14480
OsAffx.26881.1.S1_at--1024--10171Chr05:8156876..8156896 (21 bp)
TATTAGGACGGTCGCGGACCAGCAA
LOC_Os05g14480
OsAffx.26881.1.S1_at--952--1711Chr05:8156859..8156883 (25 bp)
ACCAGCAAAGGCGTGTTGGGCCGCA
LOC_Os05g14480
OsAffx.26881.1.S1_at--1049--6591Chr05:8156825..8156849 (25 bp)
GATTGGAAGGGCTGACCACCTCGGC
LOC_Os05g14480
OsAffx.26881.1.S1_at--1062--4771NONE
GCTGCGATTTCTGGCGAGAGAAGCT
NONE
OsAffx.26881.1.S1_at--628--2491Chr05:8156571..8156595 (25 bp)
AACAGAGGGATCAAAGGGCAGCGAC
LOC_Os05g14480
OsAffx.26881.1.S1_at--638--5731Chr05:8156311..8156573 (25 bp)
GACGGGCGGCGGTAAAACTACTGCT
LOC_Os05g14480
OsAffx.26881.1.S1_at--9--10631Chr05:8156261..8156285 (25 bp)
TTCGCACTAATCCAAACACACTCAT
LOC_Os05g14480
OsAffx.26881.1.S1_at--1070--6331Chr05:8156232..8156256 (25 bp)
GATGCTATAGTAAAACAACCGGTGT
LOC_Os05g14480
OsAffx.26881.1.S1_at--36--131Chr05:8156200..8156224 (25 bp)
ATTCTTCGAGATAGCGCTGGGAAAA
LOC_Os05g14480
OsAffx.26881.1.S1_at--351--8651Chr05:8156184..8156207 (24 bp)
TGGGAAAACCATCTTTGCATCCTGC
LOC_Os05g14480
Target Sequence 
TGCCAGCAATGGGTATTAGGACGGTCGCGGACCAGCAAAGGCGTGTTGGGCCGCAGCTCCAGCGGATTGGAAGGGCTGAC
CACCTCGGCGCTGGGATGGGGAGGCTGCGATTTCTGGCGAGAGAAGCTGCGGGGAGGGAATGCAGCAGCGGCGATTGAAC
AGAGGGATCAAAGGGCAGCGACGGGCGGCGGTAAAACTACTGCTTTTTATATTAATATGGATATAGAAATTCGCACTAAT
CCAAACACACTCATTAGAGATGCTATAGTAAAACAACCGGTGTCGGGGCAATTCTTCGAGATAGCGCTGGGAAAACCATC
TTTGCATCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis