Browse Element(s) Details


OsAffx.26896.1.S1_at

Description tigr:9633.m01313
TID=OsAffx.26896.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1493011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14880Os.53594.1.S1_at11/115+8429808..8431098expressed protein
LOC_Os05g14890OsAffx.14700.1.S1_at11/115+8434877..8436271hypothetical protein
LOC_Os05g14900OsAffx.26894.1.S1_at11/115+8439795..8441746expressed protein
LOC_Os05g14920OsAffx.14701.1.S1_at11/115+8451292..8451924hypothetical protein
LOC_Os05g14930OsAffx.26896.1.S1_at11/115+8454704..8457403expressed protein
LOC_Os05g14940Os.7726.1.S1_at4/115+8458227..8462086hAT family dimerisation domain containing protein, expressed
LOC_Os05g14940OsAffx.26780.1.S1_at1/115+8458227..8462086hAT family dimerisation domain containing protein, expressed
LOC_Os05g14950OsAffx.26897.1.S1_at11/115+8461716..8463394hypothetical protein
LOC_Os05g14960OsAffx.26898.1.S1_at11/115+8467470..8468034hypothetical protein
LOC_Os05g14970OsAffx.4341.1.S1_at11/115+8471366..8473983hypothetical protein
LOC_Os05g14980OsAffx.4342.1.S1_at6/115+8476843..8480270hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26896.1.S1_at--846--5171Chr05:8456886..8456910 (25 bp)
GCAATAGTTTTGACGTACATAACGA
LOC_Os05g14930
OsAffx.26896.1.S1_at--449--2651Chr05:8456921..8456945 (25 bp)
AAGCCTCCAAAACAATCTGGTCCGA
LOC_Os05g14930
OsAffx.26896.1.S1_at--774--3031Chr05:8456934..8456958 (25 bp)
AATCTGGTCCGAAGAAGCCCTGGGT
LOC_Os05g14930
OsAffx.26896.1.S1_at--851--5411Chr05:8456947..8456971 (25 bp)
GAAGCCCTGGGTTCCGAAAAATGAT
LOC_Os05g14930
OsAffx.26896.1.S1_at--258--3131Chr05:8456991..8457015 (25 bp)
AATTTCTAGCAGCTCTGATGTCCCT
LOC_Os05g14930
OsAffx.26896.1.S1_at--450--2971Chr05:8457037..8457061 (25 bp)
AATGGTTGATGCACATGTATTTTGT
LOC_Os05g14930
OsAffx.26896.1.S1_at--438--751Chr05:8457063..8457087 (25 bp)
ATGTCACATCAGTGGATGCAGCACT
LOC_Os05g14930
OsAffx.26896.1.S1_at--234--7991Chr05:8457076..8457100 (25 bp)
GGATGCAGCACTGGTGAAGAAGCTC
LOC_Os05g14930
OsAffx.26896.1.S1_at--985--3711Chr05:8457198..8457222 (25 bp)
CTAGCTGCATCAAAGACTTCAATGG
LOC_Os05g14930
OsAffx.26896.1.S1_at--364--431Chr05:8457225..8457249 (25 bp)
ATCATTTCGATGCTGTACTGTCCAC
LOC_Os05g14930
OsAffx.26896.1.S1_at--1124--3871Chr05:8457237..8457261 (25 bp)
CTGTACTGTCCACGGCTTTGAAGAA
LOC_Os05g14930
Target Sequence 
GCAATAGTTTTGACGTACATAACGATGAAGAAAGCAAGCCTCCAAAACAATCTGGTCCGAAGAAGCCCTGGGTTCCGAAA
AATGATGAGCTATCTGAAGAAACGAAATTTCTAGCAGCTCTGATGTCCCTTCTTGTGGTGATATGCAACAAAATGGTTGA
TGCACATGTATTTTGTTATGTCACATCAGTGGATGCAGCACTGGTGAAGAAGCTCAAGAAGATAATCGAAGCAAATAACA
AAAACACAGCTGACTGTCTAAGAATAGTGAAACTTGCCTGTCAGGTGGTTATAGCGATAATTCATCTCAAACCTAGCTGC
ATCAAAGACTTCAATGGAAATCATTTCGATGCTGTACTGTCCACGGCTTTGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis