Browse Element(s) Details


OsAffx.26904.1.S1_x_at

Description tigr:9633.m01340
TID=OsAffx.26904.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g151909/11hypothetical protein
LOC_Os08g338401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15150Os.50261.1.S1_at11/115+8570230..8576318Leucyl-tRNA synthetase, cytoplasmic, putative, expressed
LOC_Os05g15150Os.50261.1.S2_at10/115+8570230..8576318Leucyl-tRNA synthetase, cytoplasmic, putative, expressed
LOC_Os05g15160Os.48609.1.S1_s_at11/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15160OsAffx.23696.1.S1_x_at1/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15160OsAffx.988.1.S1_at1/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15170NANA5+8592558..8593471Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g15180Os.55287.1.S1_at11/115+8595804..8597787expressed protein
LOC_Os05g15190OsAffx.26904.1.S1_at9/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.26904.1.S1_x_at9/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.29316.1.S1_x_at2/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.14776.1.S1_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.20927.2.S1_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.14776.1.S1_x_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15200NANA5+8606261..8608023Zinc knuckle family protein
LOC_Os05g15210NANA5+8609337..8611693retrotransposon protein, putative, unclassified
LOC_Os05g15220NANA5+8612544..8617644retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15230Os.54939.1.S1_at11/115+8619474..8621547expressed protein
LOC_Os05g15240OsAffx.21066.1.S1_x_at3/115+8623190..8626815expressed protein
LOC_Os05g15240Os.27004.1.A1_at2/115+8623190..8626815expressed protein
LOC_Os05g15240OsAffx.9772.1.S1_at1/115+8623190..8626815expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26904.1.S1_x_at--959--7131Chr05:8600812..8600836 (25 bp)
GTCTACACTTGGTTCTCGACTAGTA
LOC_Os05g15190
OsAffx.26904.1.S1_x_at--496--3611Chr05:8600819..8600843 (25 bp)
CTTGGTTCTCGACTAGTAGATTGTA
LOC_Os05g15190
OsAffx.26904.1.S1_x_at--391--7892Chr05:8600978..8601002 (25 bp)
GGTTCTCGACCACCTGAAAATTCAT
LOC_Os05g15190
OsAffx.26904.1.S1_x_at--945--9811NONE
TAAAAGTTCATCTTCAGGAGGCAGT
NONE
OsAffx.26904.1.S1_x_at--110--2831NONE
AAGTTCATCTTCAGGAGGCAGTTCT
NONE
OsAffx.26904.1.S1_x_at--647--10532Chr05:8601475..8601498 (24 bp)
TTCAGGAGGCAGTTCTCACAGGTCA
LOC_Os05g15190
OsAffx.26904.1.S1_x_at--620--131Chr05:8601517..8601541 (25 bp)
ATTACTCTGGATTCTCTTCAAGTGG
LOC_Os05g15190
OsAffx.26904.1.S1_x_at--85--9731Chr05:8601534..8602036 (25 bp)
TCAAGTGGTAGAGAGATCCCTTACC
LOC_Os05g15190
OsAffx.26904.1.S1_x_at--738--5511Chr05:8602532..8602556 (25 bp)
GAAAATTCCATTCAACGTTGTCCAG
LOC_Os05g15190
OsAffx.26904.1.S1_x_at--175--91Chr05:8602536..8602560 (25 bp)
ATTCCATTCAACGTTGTCCAGGACT
LOC_Os05g15190
OsAffx.26904.1.S1_x_at--308--3571Chr05:8602540..8602564 (25 bp)
CATTCAACGTTGTCCAGGACTCCAT
LOC_Os05g15190
Target Sequence 
GTCTACACTTGGTTCTCGACTAGTAGATTGTAGCGATCTCTCACCACCTGAAAATTCGTCTTCGGGTGATCGAGATACGT
CTACACCTAGTTCTCGACCAGTAGATTGTAGCGATCTCTCACCACCTAAAATTTCATCTTTCGGTGATCGAGATACGCCT
ATACCTGGTTCTCGACCACCTGAAAATTCATCTTCAGGTGATCGAGATACGTCTACACCTGGTTCTCGACCAGTTGATTG
TAGCGATCTCTCACCACCTAAAAGTTCATCTTCAGGAGGCAGTTCTCACAGGTCACGAGAATGTCGTCCATCTATTACTC
TGGATTCTCTTCAAGTGGTAGAGAGATCCCTTACCACGATAGCACCTACTCTTGAAATCGAACCTATTGACCCTTTACGC
CATTCTGACAAGCCTCCAAGAGACCTACGGGAATTTTGGCTAGGGACGCCCAGAGCAGATAAGGTCTTGTCAGACTCTGA
GAGCCGAACGACCATGAAAATTCCATTCAACGTTGTCCAGGACTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26904.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis