Browse Element(s) Details


OsAffx.26951.1.S1_at

Description tigr:9633.m01729
TID=OsAffx.26951.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1913011/11hypothetical protein
LOC_Os01g664101/11hypothetical protein
LOC_Os01g259601/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19080Os.53479.1.S1_x_at1/115+11052502..11055364hypothetical protein
LOC_Os05g19090OsAffx.10632.1.S1_at1/115+11056119..11058875retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19100OsAffx.21161.1.S1_at1/115+11059303..11062395retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g19110Os.48232.1.S1_at11/115+11066962..11069719expressed protein
LOC_Os05g19120OsAffx.4376.1.S1_at11/115+11072064..11072924hypothetical protein
LOC_Os05g19130OsAffx.26951.1.S1_at11/115+11076712..11077358hypothetical protein
LOC_Os05g19140NANA5+11082909..11089631retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19150Os.51080.1.S1_at10/115+11093852..11095635hydrolase, alpha/beta fold family protein, expressed
LOC_Os05g19160NANA5+11097968..11101195transposon protein, putative, unclassified
LOC_Os05g19170NANA5+11101836..11104946transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26951.1.S1_at--1039--79310Chr10:1046766..1046790 (24 bp)
GGATACCCTTATGATAGGACATTAA
NONE
OsAffx.26951.1.S1_at--859--7591Chr05:11077276..11077300 (25 bp)
GGGCATACAGTGTCCATTCTAACTA
LOC_Os05g19130
OsAffx.26951.1.S1_at--876--3591Chr05:11077262..11077286 (25 bp)
CATTCTAACTATGGGCCCCTTGACG
LOC_Os05g19130
OsAffx.26951.1.S1_at--885--3571Chr05:11077232..11077256 (25 bp)
CTGGCCCGACCCATAAAAGGCGAAT
LOC_Os05g19130
OsAffx.26951.1.S1_at--729--4311Chr05:11077205..11077229 (25 bp)
CCTTCATGGGCCGTGCTGCTAGGTG
LOC_Os05g19130
OsAffx.26951.1.S1_at--79--3811Chr05:11077178..11077202 (25 bp)
CTCCTTGGAGAAGCCGGTCTTCCAT
LOC_Os05g19130
OsAffx.26951.1.S1_at--1117--2591Chr05:11077147..11077171 (25 bp)
AACCCTTCCTGCTTCGACCAGAGGG
LOC_Os05g19130
OsAffx.26951.1.S1_at--27--2071Chr05:11077119..11077143 (25 bp)
ACTTGGCGGTGAGCCCTTCGGGCTT
LOC_Os05g19130
OsAffx.26951.1.S1_at--699--3951Chr05:11077101..11077125 (25 bp)
CGGGCTTGGCGGCAAACCCTTCATG
LOC_Os05g19130
OsAffx.26951.1.S1_at--1085--2351Chr05:11077088..11077112 (25 bp)
AAACCCTTCATGCTTCGACTTGAGG
LOC_Os05g19130
OsAffx.26951.1.S1_at--719--10631Chr05:11077075..11077099 (25 bp)
TTCGACTTGAGGCTTCGCCTAGAGG
LOC_Os05g19130
Target Sequence 
GGATACCCTTATGATAGGACATTAAAAGGGGCATACAGTGTCCATTCTAACTATGGGCCCCTTGACGGGACCCTGGCCCG
ACCCATAAAAGGCGAATGGCCTTCATGGGCCGTGCTGCTAGGTGGGCTCCTTGGAGAAGCCGGTCTTCCATGGGGAGAAC
CCTTCCTGCTTCGACCAGAGGGGAGACTTGGCGGTGAGCCCTTCGGGCTTGGCGGCAAACCCTTCATGCTTCGACTTGAG
GCTTCGCCTAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis