Browse Element(s) Details


OsAffx.27081.2.S1_at

Description tigr:9633.m02731
TID=OsAffx.27081.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transmembrane amino acid transporter protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3015011/11amino acid transporter family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30130Os.54342.1.S1_at11/115+17360770..17364936DnaJ domain containing protein, expressed
LOC_Os05g30140Os.10299.1.S1_at11/115+17365153..17372246Pre-mRNA splicing factor SF2, putative, expressed
LOC_Os05g30150OsAffx.27081.2.S1_at11/115+17384645..17387319amino acid transporter family protein, putative
LOC_Os05g30160OsAffx.4474.1.S1_at11/115+17401913..17402653hypothetical protein
LOC_Os05g30170Os.14919.1.S1_at6/115+17404655..17406828hypothetical protein
LOC_Os05g30170Os.56216.1.S1_at2/115+17404655..17406828hypothetical protein
LOC_Os05g30170OsAffx.29313.1.S1_at1/115+17404655..17406828hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27081.2.S1_at--959--451Chr05:17385139..17385163 (25 bp)
ATCTCGTCGGTGTTGTGTAGCCTAA
LOC_Os05g30150
OsAffx.27081.2.S1_at--909--7431Chr05:17385125..17385149 (25 bp)
GTGTAGCCTAAACTACGCAGTGACA
LOC_Os05g30150
OsAffx.27081.2.S1_at--725--3371Chr05:17385023..17385047 (25 bp)
CACCAGGTTTGCCATCCTGACGACA
LOC_Os05g30150
OsAffx.27081.2.S1_at--603--4711Chr05:17384987..17385011 (25 bp)
GCTGGCGAACTACACGCTTGTGATC
LOC_Os05g30150
OsAffx.27081.2.S1_at--979--2011Chr05:17384979..17385003 (25 bp)
ACTACACGCTTGTGATCCAGCCAGT
LOC_Os05g30150
OsAffx.27081.2.S1_at--329--3391Chr05:17384928..17384952 (25 bp)
CAGCGACGACGGACGTTGAGAATAA
LOC_Os05g30150
OsAffx.27081.2.S1_at--196--351Chr05:17384907..17384931 (25 bp)
ATAACTGGTTGACCAGGGTGCTCAC
LOC_Os05g30150
OsAffx.27081.2.S1_at--998--291Chr05:17384878..17384902 (25 bp)
ATAGCCGTCGTCATCAGCACAGTGG
LOC_Os05g30150
OsAffx.27081.2.S1_at--998--10711Chr05:17384784..17384808 (25 bp)
TTGCTGTGCTGGTCCCGTGCCTGAG
LOC_Os05g30150
OsAffx.27081.2.S1_at--108--4771Chr05:17384724..17384748 (25 bp)
GCTGCTTCGAGAGGACGATGATTGT
LOC_Os05g30150
OsAffx.27081.2.S1_at--1064--7811Chr05:17384690..17384714 (25 bp)
GGTCATAGGAGTGTGCGTCAATGTT
LOC_Os05g30150
Target Sequence 
ATCTCGTCGGTGTTGTGTAGCCTAAACTACGCAGTGACAGTAGTGTTGAGATATCTGATCTATGGTGAGGATGTGCAGTC
GCAGGTGACACAGAACTTACCCACAGGGAAGCTGTACACCAGGTTTGCCATCCTGACGACACTGATCACCCCGCTGGCGA
ACTACACGCTTGTGATCCAGCCAGTCACAACAGCGATAGAGGAGAAGTTGTCAGCGACGACGGACGTTGAGAATAACTGG
TTGACCAGGGTGCTCACCAGCATAGCCGTCGTCATCAGCACAGTGGTGCTGGCATGCACGGTGCCCTTCTTCGGCTATCT
CATGTTGTTCATCGGGTCCTCGCTGAACGTCACCGTTGCTGTGCTGGTCCCGTGCCTGAGCTATCTCAAGATCTACATGT
CCCGAGGAGGAGTTGGCTGCTTCGAGAGGACGATGATTGTCGGGATACTGGTCATAGGAGTGTGCGTCAATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27081.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis