Browse Element(s) Details


OsAffx.2713.1.S1_at

Description tigr:9630.m02104
TID=OsAffx.2713.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2191011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21870Os.27492.1.S1_at6/112+13002638..13005812expressed protein
LOC_Os02g21880Os.10889.1.S1_at11/112+13006970..13013145expressed protein
LOC_Os02g21890Os.27961.1.S1_at11/112+13014483..13015520expressed protein
LOC_Os02g21900OsAffx.24378.1.S1_at10/112+13025539..1302657940S ribosomal protein S7, putative
LOC_Os02g21910OsAffx.2713.1.S1_at11/112+13027546..13030044hypothetical protein
LOC_Os02g21920Os.17019.1.A1_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21920Os.49731.1.S1_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21920Os.49731.1.S1_s_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21930OsAffx.2714.1.S1_at11/112+13042344..13042744hypothetical protein
LOC_Os02g21950OsAffx.31869.4.S1_at5/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.4.S1_x_at3/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.3.S1_at3/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.5.S1_x_at2/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.3.S1_x_at2/112+13049262..13049837retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2713.1.S1_at--883--4351Chr02:13029912..13029936 (25 bp)
CCAGCGGCGGACTGCCATGGCCTGT
LOC_Os02g21910
OsAffx.2713.1.S1_at--185--731Chr02:13027690..13028014 (25 bp)
ATGTTACAAAGAAATTGCGTGGCAT
LOC_Os02g21910
OsAffx.2713.1.S1_at--897--71Chr02:13027677..13027701 (25 bp)
ATTGCGTGGCATGATCTTGGTGTCT
LOC_Os02g21910
OsAffx.2713.1.S1_at--697--3991Chr02:13027673..13027697 (25 bp)
CGTGGCATGATCTTGGTGTCTTCAT
LOC_Os02g21910
OsAffx.2713.1.S1_at--490--6431Chr02:13027665..13027689 (25 bp)
GATCTTGGTGTCTTCATGTTGATGT
LOC_Os02g21910
OsAffx.2713.1.S1_at--211--9631Chr02:13027652..13027676 (25 bp)
TCATGTTGATGTATGATGCGAACAA
LOC_Os02g21910
OsAffx.2713.1.S1_at--1021--4091Chr02:13027634..13027658 (25 bp)
CGAACAATGGTTCTATCTATAGTAG
LOC_Os02g21910
OsAffx.2713.1.S1_at--825--8271Chr02:13027610..13027634 (25 bp)
GGCATGGTCACATTAACTTATGCAA
LOC_Os02g21910
OsAffx.2713.1.S1_at--599--10491Chr02:13027598..13027622 (25 bp)
TTAACTTATGCAAGTGCCCCATCTT
LOC_Os02g21910
OsAffx.2713.1.S1_at--1010--2851Chr02:13027587..13027611 (25 bp)
AAGTGCCCCATCTTCGTTGTCATTG
LOC_Os02g21910
OsAffx.2713.1.S1_at--664--4531Chr02:13027583..13027607 (25 bp)
GCCCCATCTTCGTTGTCATTGTCAT
LOC_Os02g21910
Target Sequence 
CCAGCGGCGGACTGCCATGGCCTGTGGCGATTCTTGGAGATGTGGTATACGGGTGGTCTAGCCGACACATGCGAGTACAA
GGAAGTAGCTGAAGCTAAACTTACATATAAACAAAACCTATGTTACAAAGAAATTGCGTGGCATGATCTTGGTGTCTTCA
TGTTGATGTATGATGCGAACAATGGTTCTATCTATAGTAGGCATGGTCACATTAACTTATGCAAGTGCCCCATCTTCGTT
GTCATTGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis