Browse Element(s) Details


OsAffx.27141.1.S1_at

Description tigr:9633.m03096
TID=OsAffx.27141.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3359011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33570Os.7144.2.S1_a_at11/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os05g33570OsAffx.27140.1.S1_at9/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os05g33580Os.55404.1.S1_at6/115+19656771..19657448expressed protein
LOC_Os05g33590OsAffx.27141.1.S1_at11/115+19659153..19661654Cytochrome P450 family protein, expressed
LOC_Os05g33600Os.57218.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed
LOC_Os05g33600Os.15851.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed
LOC_Os05g33610Os.17240.1.S1_at11/115+19685640..19691882expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0016131biological_processbrassinosteroid metabolism
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27141.1.S1_at--64--8011Chr05:19659714..19659738 (25 bp)
GGATGGTCAACAGGGATGTCAAGCT
LOC_Os05g33590
OsAffx.27141.1.S1_at--262--2691Chr05:19659694..19659718 (25 bp)
AAGCTGGGCAAACTCGACATTCCAG
LOC_Os05g33590
OsAffx.27141.1.S1_at--653--9231Chr05:19659657..19659681 (25 bp)
TCCATTTTCCCATTCTTGACATTCA
LOC_Os05g33590
OsAffx.27141.1.S1_at--184--3611Chr05:19659556..19659580 (25 bp)
CTTGGTGCATACTTTCCCTTTGGGA
LOC_Os05g33590
OsAffx.27141.1.S1_at--445--10631Chr05:19659543..19659567 (25 bp)
TTCCCTTTGGGATTGGCCCTACTAT
LOC_Os05g33590
OsAffx.27141.1.S1_at--592--10791Chr05:19659447..19659471 (25 bp)
TTGTTGTCTCGCGTCCTATGTTCAT
LOC_Os05g33590
OsAffx.27141.1.S1_at--424--9331Chr05:19659439..19659463 (25 bp)
TCGCGTCCTATGTTCATGCGCCAAT
LOC_Os05g33590
OsAffx.27141.1.S1_at--275--9171Chr05:19659423..19659447 (25 bp)
TGCGCCAATGCATGGAGTCACACTC
LOC_Os05g33590
OsAffx.27141.1.S1_at--120--7931Chr05:19659335..19659359 (25 bp)
GGATTTCTGGGTCTTTGCAGTAAAT
LOC_Os05g33590
OsAffx.27141.1.S1_at--188--5271Chr05:19659305..19659329 (25 bp)
GAATGCAGCAGACGTACATCGTGTA
LOC_Os05g33590
OsAffx.27141.1.S1_at--208--7651Chr05:19659197..19659221 (25 bp)
GGGAGCATTTTCCATGTACAAACAA
LOC_Os05g33590
Target Sequence 
GGATGGTCAACAGGGATGTCAAGCTGGGCAAACTCGACATTCCAGCTGGCACGCAGCTCCATTTTCCCATTCTTGACATT
CACCATGATGTTAACATATGGGGCACCAATGCAGATGAGTTTGATCCATCAAGGTTTGCAGAGGGCAAGAGCTATCACCT
TGGTGCATACTTTCCCTTTGGGATTGGCCCTACTATCTGTGTCGGCCAGAATCTTACGATGGTTGAAGAAAAGGTGGCCC
TTGCAATGATCCTTCAGCGTTTCGCGCTTGTTGTCTCGCGTCCTATGTTCATGCGCCAATGCATGGAGTCACACTCCAAC
CCCAGTACGGTGCTCAAGTTCTTGCCCATAAGATTTGAGACTTCGATGGATTTGTGTGTGGATTTCTGGGTCTTTGCAGT
AAATATGGTGAATGCAGCAGACGTACATCGTGTATTATATATCTTTGTGAACAATTTTGGAAGGATGTTTCCAGCTCGTC
TGAACTTTCTATCAAAAGTGGAATTTGCTGGAGCCATGGGAGCATTTTCCATGTACAAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis