Browse Element(s) Details


OsAffx.27173.1.S1_at

Description tigr:9633.m03275
TID=OsAffx.27173.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3523011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35210OsAffx.14970.1.S1_at11/115+20830729..20831139hypothetical protein
LOC_Os05g35220OsAffx.4523.1.S1_at10/115+20846331..20847449hypothetical protein
LOC_Os05g35230OsAffx.27173.1.S1_at11/115+20847928..20850838expressed protein
LOC_Os05g35240Os.53577.1.S1_at11/115+20853038..20853878expressed protein
LOC_Os05g35250OsAffx.4524.1.S1_at11/115+20855445..20855856hypothetical protein
LOC_Os05g35260Os.49517.1.S1_at11/115+20856377..20859033PB1 domain containing protein, expressed
LOC_Os05g35260OsAffx.12617.1.S1_at3/115+20856377..20859033PB1 domain containing protein, expressed
LOC_Os05g35274Os.49586.1.S1_a_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.49586.1.S2_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.12539.1.S1_at9/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274OsAffx.11744.1.S1_x_at1/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35290Os.52536.1.S1_at1/115+20870237..20872718Phenylalanine ammonia-lyase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27173.1.S1_at--510--911Chr05:20849432..20849456 (25 bp)
AGGCGGCGGAGACGTCAGGGACGAC
LOC_Os05g35230
OsAffx.27173.1.S1_at--769--1651Chr05:20849520..20849544 (25 bp)
AGCGCCATCTCGTTCGGCTTCGCGG
LOC_Os05g35230
OsAffx.27173.1.S1_at--254--7171Chr05:20849730..20849754 (25 bp)
GTCTCGCCGGACAAGCTCTTCTGTA
LOC_Os05g35230
OsAffx.27173.1.S1_at--425--8151Chr05:20849738..20849762 (25 bp)
GGACAAGCTCTTCTGTACACCGGGC
LOC_Os05g35230
OsAffx.27173.1.S1_at--796--2691Chr05:20849742..20849765 (24 bp)
AAGCTCTTCTGTACACCGGGCAAGT
LOC_Os05g35230
OsAffx.27173.1.S1_at--627--3751Chr05:20849745..20849765 (21 bp)
CTCTTCTGTACACCGGGCAAGTTGG
LOC_Os05g35230
OsAffx.27173.1.S1_at--478--3231Chr05:20850684..20850706 (23 bp)
CAAGTTGGAGGTCGTGCCGGCGGAG
LOC_Os05g35230
OsAffx.27173.1.S1_at--163--3951Chr05:20850702..20850726 (25 bp)
CGGAGGATCTGACGGTGCTGATGCC
LOC_Os05g35230
OsAffx.27173.1.S1_at--195--5071Chr05:20850730..20850754 (25 bp)
GCAGCGGTATCCGACGTTCCTGGCG
LOC_Os05g35230
OsAffx.27173.1.S1_at--977--4671Chr05:20850733..20850757 (25 bp)
GCGGTATCCGACGTTCCTGGCGCAG
LOC_Os05g35230
OsAffx.27173.1.S1_at--1133--8191Chr05:20850784..20850808 (25 bp)
GGAAGGCGTGCGTTGGCCTCCCCAT
LOC_Os05g35230
Target Sequence 
AGGCGGCGGAGACGTCAGGGACGACGGCGACGGCGGCGCAGCGTCGGCGGCGGCGGCGAAGGGGCTCGGCGACGCGTCCA
CGAACGCCAGCGCCATCTCGTTCGGCTTCGCGGCGACGGCCATCCTCATCTCCATGTTCCTCCTCATGGCCATCTTCGAG
CACCTCATCAAGCCCAGCCTCTCCTCGTCTTCCTCGTCGTCGTCGTCGTCCTCCTCCTCCTCCCGGGCCTCCCACGGCGA
CGGCGACGGGCACGGCCAGTCGTCGTCGTCCCACCACGCCGCCGCCGCCGCCGCCGGCGTCTCGCCGGACAAGCTCTTCT
GTACACCGGGCAAGTTGGAGGTCGTGCCGGCGGAGGATCTGACGGTGCTGATGCCGGGGCAGCGGTATCCGACGTTCCTG
GCGCAGCCGGCGCCGCTGCTCCCGTGGCCGAGGGAAGGCGTGCGTTGGCCTCCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis