Browse Element(s) Details


OsAffx.27188.1.S1_at

Description tigr:9633.m03338
TID=OsAffx.27188.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3582011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35760OsAffx.27184.1.S1_at11/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.44554.1.A1_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.56292.1.S1_x_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35770OsAffx.27185.1.S1_at11/115+21146238..21147844Serine/threonine-protein kinase SAPK9, putative
LOC_Os05g35780NANA5+21149277..21149765hypothetical protein
LOC_Os05g35789NANA5+21151067..21151303NA
LOC_Os05g35800OsAffx.27186.1.S1_at11/115+21157567..21158431expressed protein
LOC_Os05g35810OsAffx.27187.1.S1_at11/115+21164478..21165906hypothetical protein
LOC_Os05g35820OsAffx.27188.1.S1_at11/115+21167622..21168724hypothetical protein
LOC_Os05g35830OsAffx.27188.2.S1_at11/115+21175629..21176700expressed protein
LOC_Os05g35840OsAffx.27189.1.S1_at11/115+21183159..21184439hypothetical protein
LOC_Os05g35850OsAffx.27190.1.S1_at11/115+21186034..21187616hypothetical protein
LOC_Os05g35850OsAffx.22510.1.S1_s_at1/115+21186034..21187616hypothetical protein
LOC_Os05g35850OsAffx.20967.1.S1_x_at1/115+21186034..21187616hypothetical protein
LOC_Os05g35860NANA5+21189519..21194570retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27188.1.S1_at--619--3991Chr05:21168256..21168280 (25 bp)
CGTGTTGTTCCTGGACGGCGCGATC
LOC_Os05g35820
OsAffx.27188.1.S1_at--221--5731Chr05:21168269..21168293 (25 bp)
GACGGCGCGATCGTGGAGTCCAACT
LOC_Os05g35820
OsAffx.27188.1.S1_at--263--6111Chr05:21168284..21168308 (25 bp)
GAGTCCAACTGCGTCCTCGTCAGGG
LOC_Os05g35820
OsAffx.27188.1.S1_at--890--8291Chr05:21168311..21168335 (25 bp)
GGCTTCTTTGCTTCCGCGGGCGTGC
LOC_Os05g35820
OsAffx.27188.1.S1_at--1091--671Chr05:21168362..21168386 (25 bp)
ATGACATCCTACTTCATGCTCCGCG
LOC_Os05g35820
OsAffx.27188.1.S1_at--535--1111Chr05:21168505..21168529 (25 bp)
AGTGTCGTCGCCTAATCCTCTGCTG
LOC_Os05g35820
OsAffx.27188.1.S1_at--244--9771Chr05:21168517..21168541 (25 bp)
TAATCCTCTGCTGGTGCCTGTACCT
LOC_Os05g35820
OsAffx.27188.1.S1_at--651--2631Chr05:21168549..21168573 (25 bp)
AAGCGCCGCCGAACCAGCAGTTTGC
LOC_Os05g35820
OsAffx.27188.1.S1_at--763--1511Chr05:21168564..21168588 (25 bp)
AGCAGTTTGCTCATCCGGCTACCAG
LOC_Os05g35820
OsAffx.27188.1.S1_at--956--3731Chr05:21168651..21168675 (25 bp)
CTCAAGGCTATGGATCGCAGGCGTC
LOC_Os05g35820
OsAffx.27188.1.S1_at--273--6391Chr05:21168663..21168687 (25 bp)
GATCGCAGGCGTCTAACCAGCAGCA
LOC_Os05g35820
Target Sequence 
CGTGTTGTTCCTGGACGGCGCGATCGTGGAGTCCAACTGCGTCCTCGTCAGGGGCGGCTTCTTTGCTTCCGCGGGCGTGC
TGACCCTCATCACCACGGCCCTCGGGATGACATCCTACTTCATGCTCCGCGCACAGCCGGACGAGCCCGCGGCGCCGGCG
GCGCGGCGACCGCCAGGTCCGGCGGGCGGCGATGAACCCACGCCGATCGTCGGGGTCCCGACGGCGGTCCCGGCCGGGTT
CCCGCCACCAGTGTCGTCGCCTAATCCTCTGCTGGTGCCTGTACCTGCTGCTCAAGCGCCGCCGAACCAGCAGTTTGCTC
ATCCGGCTACCAGCCAGGCGCTGCCGCACGCGCGGTTCGCTGATGCAGCTGTTCCTGATCCTGCTCCTGCTGCTGCTCAA
GGCTATGGATCGCAGGCGTCTAACCAGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis