Browse Element(s) Details


OsAffx.27210.1.S1_at

Description tigr:9633.m03465
TID=OsAffx.27210.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3751011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37480OsAffx.14994.1.S1_at11/115+21851282..21853570hypothetical protein
LOC_Os05g37490NANA5+21855832..21856146hypothetical protein
LOC_Os05g37500Os.12591.1.S1_at11/115+21859888..21876601expressed protein
LOC_Os05g37510OsAffx.27210.1.S1_at11/115+21878353..21878709hypothetical protein
LOC_Os05g37520Os.8774.1.S1_at11/115+21880609..21882818expressed protein
LOC_Os05g37530NANA5+21887198..21887998expressed protein
LOC_Os05g37540Os.45774.1.S1_at9/115+21892251..21896203transposon protein, putative, unclassified
LOC_Os05g37550OsAffx.31018.3.S1_x_at11/115+21896902..21901449hypothetical protein
LOC_Os05g37550OsAffx.31018.2.S1_x_at11/115+21896902..21901449hypothetical protein
LOC_Os05g37550Os.50578.1.S1_x_at7/115+21896902..21901449hypothetical protein
LOC_Os05g37560NANA5+21902727..21904076hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27210.1.S1_at--712--4311Chr05:21878398..21878422 (25 bp)
CCTTGCCGCACTAGGAGCGCGACGA
LOC_Os05g37510
OsAffx.27210.1.S1_at--202--10711Chr05:21878400..21878424 (25 bp)
TTGCCGCACTAGGAGCGCGACGACG
LOC_Os05g37510
OsAffx.27210.1.S1_at--88--4691Chr05:21878545..21878569 (25 bp)
GCGGTTGCGGCAGGCGATGACGTCG
LOC_Os05g37510
OsAffx.27210.1.S1_at--895--8251Chr05:21878578..21878602 (25 bp)
GGCTATGCGAGAGAGAACAACCGGC
LOC_Os05g37510
OsAffx.27210.1.S1_at--83--10091Chr05:21878581..21878605 (25 bp)
TATGCGAGAGAGAACAACCGGCAAG
LOC_Os05g37510
OsAffx.27210.1.S1_at--716--4071Chr05:21878585..21878609 (25 bp)
CGAGAGAGAACAACCGGCAAGGAGA
LOC_Os05g37510
OsAffx.27210.1.S1_at--237--7571Chr05:21878629..21878653 (25 bp)
GGGCCCATAGTTGGCCAGGGATTTT
LOC_Os05g37510
OsAffx.27210.1.S1_at--636--4111Chr05:21878632..21878656 (25 bp)
CCCATAGTTGGCCAGGGATTTTTGG
LOC_Os05g37510
OsAffx.27210.1.S1_at--416--3571Chr05:21878634..21878658 (25 bp)
CATAGTTGGCCAGGGATTTTTGGCT
LOC_Os05g37510
OsAffx.27210.1.S1_at--1125--6531Chr05:21878648..21878672 (25 bp)
GATTTTTGGCTGGTGGAGACACTGT
LOC_Os05g37510
OsAffx.27210.1.S1_at--1085--10351Chr05:21878650..21878674 (25 bp)
TTTTTGGCTGGTGGAGACACTGTTG
LOC_Os05g37510
Target Sequence 
CCTTGCCGCACTAGGAGCGCGACGACGGCGGCGCTGGGTGGGCAGATCGAGGACGACGGCGTGGGCGGGCAGATCAGGAG
GAGAAGGAGCCGCTGTGGGGAAAGGGAGGCGGCGGCGCGGCGGCCGGCAACGGCGCGGACGGCGGCGGCGGTTGCGGCAG
GCGATGACGTCGGCGCTAGGGGCTATGCGAGAGAGAACAACCGGCAAGGAGATGGGAGGAGAATGTGTGTGGGGCCCATA
GTTGGCCAGGGATTTTTGGCTGGTGGAGACACTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis