Browse Element(s) Details


OsAffx.27226.1.S1_at

Description tigr:9633.m03573
TID=OsAffx.27226.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3851011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38470Os.50007.1.S1_at11/115+22484929..22487785expressed protein
LOC_Os05g38470Os.50007.1.S2_at11/115+22484929..22487785expressed protein
LOC_Os05g38480Os.20329.1.S1_at11/115+22490960..22494506Kinesin motor domain containing protein, expressed
LOC_Os05g38490NANA5+22497152..22503258Growth regulator protein, putative
LOC_Os05g38500OsAffx.27225.1.S1_s_at11/115+22504078..22505833Fasciclin domain containing protein
LOC_Os05g38500OsAffx.27225.1.S1_at11/115+22504078..22505833Fasciclin domain containing protein
LOC_Os05g38510OsAffx.27226.1.S1_at11/115+22510059..22512985hypothetical protein
LOC_Os05g38520Os.9260.1.S1_at11/115+22513239..2251530060S ribosomal protein L36-2, putative, expressed
LOC_Os05g38520Os.57302.1.S1_at11/115+22513239..2251530060S ribosomal protein L36-2, putative, expressed
LOC_Os05g38530Os.38581.1.S1_s_at11/115+22516184..22519363Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os05g38530Os.57477.1.S1_x_at1/115+22516184..22519363Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os05g38540OsAffx.13097.1.S1_s_at11/115+22527206..22531921transposon protein, putative, Mutator sub-class
LOC_Os05g38550Os.37932.1.A1_x_at11/115+22532672..22537121Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os05g38550Os.12586.1.S1_at10/115+22532672..22537121Ubiquitin-conjugating enzyme E2 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27226.1.S1_at--578--10591Chr05:22510092..22510116 (25 bp)
TTCTCGTGCTTGGTTTTAGCTGGGA
LOC_Os05g38510
OsAffx.27226.1.S1_at--745--1551Chr05:22510116..22510140 (25 bp)
AGCTATCCTGGGAAGCCGTCGCAAT
LOC_Os05g38510
OsAffx.27226.1.S1_at--788--3131Chr05:22510138..22510162 (25 bp)
AATTGGGCAAGTACGACTGCACGGG
LOC_Os05g38510
OsAffx.27226.1.S1_at--801--1611Chr05:22510557..22510581 (25 bp)
AGCGGCCTACTACTACACCAGTGAT
LOC_Os05g38510
OsAffx.27226.1.S1_at--198--671Chr05:22510609..22510633 (25 bp)
ATGACTAGTAGTCAGCCCGTGCCTA
LOC_Os05g38510
OsAffx.27226.1.S1_at--322--7291Chr05:22510627..22510651 (25 bp)
GTGCCTACTGATCAGTACCACTGTT
LOC_Os05g38510
OsAffx.27226.1.S1_at--364--1971Chr05:22510646..22510670 (25 bp)
ACTGTTACTACTGTGTGCCCGTAAA
LOC_Os05g38510
OsAffx.27226.1.S1_at--426--4371Chr05:22510685..22510709 (25 bp)
CCAAAGGATATTGCTGGTCAGTTGC
LOC_Os05g38510
OsAffx.27226.1.S1_at--246--7731Chr05:22512813..22512837 (25 bp)
GGTGGGTTATCGTGCTCGGATATAA
LOC_Os05g38510
OsAffx.27226.1.S1_at--8--8131Chr05:22512856..22512880 (25 bp)
GGACTCATACTTCATATCGGCCAAG
LOC_Os05g38510
OsAffx.27226.1.S1_at--403--6171Chr05:22512931..22512955 (25 bp)
GAGGATAGTCCCTAACATGTGTGCC
LOC_Os05g38510
Target Sequence 
TTCTCGTGCTTGGTTTTAGCTGGGAGCTATCCTGGGAAGCCGTCGCAATTGGGCAAGTACGACTGCACGGGGTGCAGCCT
TGCAGGGGTTCACAGCTCAAACCCAGCGGCCTACTACTACACCAGTGATGGGAAACAGTGGTTAGTGTTAATGGGGATGA
CTAGTAGTCAGCCCGTGCCTACTGATCAGTACCACTGTTACTACTGTGTGCCCGTAAACAAGAAGAGTAGTGCCAAAGGA
TATTGCTGGTCAGTTGCAGGGGGGTGGGTTATCGTGCTCGGATATAATGCCGATAGTGGTATGCTGGACTCATACTTCAT
ATCGGCCAAGGAGGACGACGACAAGGCGAAGACCGCGTGGGTGAGGGGCAAACTAGAGGAGAGGATAGTCCCTAACATGT
GTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis