Browse Element(s) Details


OsAffx.27228.1.S1_at

Description tigr:9633.m03594
TID=OsAffx.27228.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3869011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38670OsAffx.15013.1.S1_at11/115+22587742..22591452cation efflux family protein
LOC_Os05g38680OsAffx.15014.1.S1_s_at11/115+22594830..22596061uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g38680Os.28394.2.S1_s_at11/115+22594830..22596061uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g38690OsAffx.27228.1.S1_at11/115+22615360..22616469expressed protein
LOC_Os05g38700OsAffx.27229.1.S1_at11/115+22618262..22619611hypothetical protein
LOC_Os05g38710Os.28320.1.S1_at11/115+22625566..22630697lipin, N-terminal conserved region family protein, expressed
LOC_Os05g38710OsAffx.11471.1.S1_at1/115+22625566..22630697lipin, N-terminal conserved region family protein, expressed
LOC_Os05g38720Os.51943.1.S1_at11/115+22636077..22637822Lung seven transmembrane receptor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27228.1.S1_at--673--2951Chr05:22615929..22615953 (25 bp)
AAGGCCTACATCAAGACGATCTTCG
LOC_Os05g38690
OsAffx.27228.1.S1_at--176--2931Chr05:22615869..22615893 (25 bp)
AAGGACGCCATTCTTGGCGCGACGA
LOC_Os05g38690
OsAffx.27228.1.S1_at--1027--111Chr05:22615860..22615884 (25 bp)
ATTCTTGGCGCGACGAGAGAAACCA
LOC_Os05g38690
OsAffx.27228.1.S1_at--65--311Chr05:22615840..22615864 (25 bp)
AACCAAAGAACTCTCCCATGGTGGC
LOC_Os05g38690
OsAffx.27228.1.S1_at--34--3471Chr05:22615799..22615823 (25 bp)
CATGGAGGAGGAACCCGTTCGGCCA
LOC_Os05g38690
OsAffx.27228.1.S1_at--819--2611Chr05:22615788..22615812 (25 bp)
AACCCGTTCGGCCAGATGAGAAGCA
LOC_Os05g38690
OsAffx.27228.1.S1_at--638--2731Chr05:22615768..22615792 (25 bp)
AAGCAACAGGTGCATCGCCTCCTCA
LOC_Os05g38690
OsAffx.27228.1.S1_at--82--5391Chr05:22615708..22615732 (25 bp)
GAAGCACAAAGAGCGCGACCACGGC
LOC_Os05g38690
OsAffx.27228.1.S1_at--378--7251Chr05:22615653..22615677 (25 bp)
GTCCGGTACTCGACGTCGAACAAGA
LOC_Os05g38690
OsAffx.27228.1.S1_at--692--1571Chr05:22615518..22615542 (25 bp)
AGCTCGGAGGTGGAGAACCCGATCC
LOC_Os05g38690
OsAffx.27228.1.S1_at--1152--7571Chr05:22615491..22615515 (25 bp)
GGGCTGATCGCCTACTGCAAGAGGT
LOC_Os05g38690
Target Sequence 
AAGGCCTACATCAAGACGATCTTCGCCGCCAAACCGGCGAGCTCCGGCGACGACGACGACAAGGACGCCATTCTTGGCGC
GACGAGAGAAACCAAAGAACTCTCCCATGGTGGCCACCACCACCACAGAGCATGGAGGAGGAACCCGTTCGGCCAGATGA
GAAGCAACAGGTGCATCGCCTCCTCACAGAGCGGCGGCGGCCGTGGTTCGGTCGGAGGAGGGAAGCACAAAGAGCGCGAC
CACGGCGGCCACAGGAGGTCCTTCTCCAGCGTCATCGTCCGGTACTCGACGTCGAACAAGACGTCCCCTGCGCCGCAGTC
GTCGTCGTGCTCCTCCTCCTCGTCGGTGCGGACGTCGAGCGAGTCCGACGGCGGCGCGGCGGCGCCGGCGCTGCGGAGGA
GCAGCAGCGCGAGCTCGGAGGTGGAGAACCCGATCCAGGGGCTGATCGCCTACTGCAAGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis