Browse Element(s) Details


OsAffx.27264.1.S1_s_at

Description tigr:9633.m03807
TID=OsAffx.27264.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4074011/11L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os01g600802/11L-ascorbate oxidase homolog precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40690OsAffx.15048.1.S1_at10/115+23776180..23778569hypothetical protein
LOC_Os05g40690OsAffx.29536.4.S1_x_at2/115+23776180..23778569hypothetical protein
LOC_Os05g40700Os.33019.1.S1_at11/115+23782547..23786320expressed protein
LOC_Os05g40710NANA5+23788310..23789791GRAS family transcription factor containing protein
LOC_Os05g40720OsAffx.15049.1.S1_at10/115+23790971..23795072Glycosyl transferase family 8 protein
LOC_Os05g40720Os.55837.1.S1_x_at1/115+23790971..23795072Glycosyl transferase family 8 protein
LOC_Os05g40730NANA5+23795611..23798327hypothetical protein
LOC_Os05g40740OsAffx.27264.1.S1_s_at11/115+23800217..23802733L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os05g40740OsAffx.27264.1.S1_at11/115+23800217..23802733L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os05g40750Os.37083.2.S1_at2/115+23804950..23806506retrotransposon protein, putative, unclassified
LOC_Os05g40760OsAffx.22940.1.S1_s_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760Os.35344.3.S1_x_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.2.S1_s_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.5.S1_x_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.5.S1_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760Os.35344.18.S1_x_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.2.S1_at9/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.3.S1_x_at9/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.31552.2.S1_at1/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40770Os.46287.1.S1_a_at11/115+23816223..23822364Protein kinase domain containing protein, expressed
LOC_Os05g40770Os.52122.1.S1_at1/115+23816223..23822364Protein kinase domain containing protein, expressed
LOC_Os05g40780Os.39887.1.S1_at9/115+23824650..23827389expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27264.1.S1_s_at--105--7711Chr05:23800722..23800746 (25 bp)
GGGTGAGCCGGCACTCGGTCCAGGT
LOC_Os05g40740
OsAffx.27264.1.S1_s_at--160--9412Chr01:35075529..35075549 (21 bp)
TCGGTCCAGGTGTACCCGAGGTCGT
LOC_Os01g60080
OsAffx.27264.1.S1_s_at--824--8531Chr05:23800684..23800708 (25 bp)
TGGACGGCGATCATGCTGACGTTCG
LOC_Os05g40740
OsAffx.27264.1.S1_s_at--648--8371Chr05:23800679..23800703 (25 bp)
GGCGATCATGCTGACGTTCGACAAC
LOC_Os05g40740
OsAffx.27264.1.S1_s_at--769--8931Chr05:23800668..23800692 (25 bp)
TGACGTTCGACAACGCCGGGATGTG
LOC_Os05g40740
OsAffx.27264.1.S1_s_at--610--771Chr05:23800648..23800672 (25 bp)
ATGTGGAACGTGAGGTCCAACATCT
LOC_Os05g40740
OsAffx.27264.1.S1_s_at--1045--2571Chr05:23800642..23800666 (25 bp)
AACGTGAGGTCCAACATCTGGGAGA
LOC_Os05g40740
OsAffx.27264.1.S1_s_at--464--4331Chr05:23800632..23800656 (25 bp)
CCAACATCTGGGAGAGGCACTACCT
LOC_Os05g40740
OsAffx.27264.1.S1_s_at--928--8371Chr05:23800606..23800630 (25 bp)
GGCGAGCAGCTCTACATCAGCGTCG
LOC_Os05g40740
OsAffx.27264.1.S1_s_at--630--2091Chr05:23800593..23800617 (25 bp)
ACATCAGCGTCGTCTCGCCGGCGAG
LOC_Os05g40740
OsAffx.27264.1.S1_s_at--358--4072Chr01:35075661..35075685 (25 bp)
CGAGGTCGCTCCGGGACGAGTACAA
LOC_Os01g60080
Target Sequence 
GGGTGAGCCGGCACTCGGTCCAGGTGTACCCGAGGTCGTGGACGGCGATCATGCTGACGTTCGACAACGCCGGGATGTGG
AACGTGAGGTCCAACATCTGGGAGAGGCACTACCTCGGCGAGCAGCTCTACATCAGCGTCGTCTCGCCGGCGAGGTCGCT
CCGGGACGAGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27264.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis