Browse Element(s) Details


OsAffx.27341.1.S1_at

Description tigr:9633.m04381
TID=OsAffx.27341.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4660011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46530Os.54919.1.S1_at9/115+26865119..26866466pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g46540OsAffx.4637.1.S1_at9/115+26866999..26868286hypothetical protein
LOC_Os05g46550Os.49604.1.S1_at11/115+26869303..26872649Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os05g46560OsAffx.4638.1.S1_s_at11/115+26875251..26878167Ran GTPase activating protein, putative, expressed
LOC_Os05g46570Os.32650.1.S1_at11/115+26879699..26882594transducin family protein, putative, expressed
LOC_Os05g46580Os.4161.1.S1_at11/115+26883239..26886623Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os05g46590OsAffx.15129.1.S1_at11/115+26889094..26889699hypothetical protein
LOC_Os05g46600OsAffx.27341.1.S1_at11/115+26890405..26891228hypothetical protein
LOC_Os05g46610OsAffx.4639.1.S1_at11/115+26904201..26905534Myb-related protein Hv33, putative, expressed
LOC_Os05g46610Os.57514.1.S1_x_at1/115+26904201..26905534Myb-related protein Hv33, putative, expressed
LOC_Os05g46620OsAffx.4640.1.S1_x_at11/115+26907971..26911875Chaperone protein dnaJ 10, putative, expressed
LOC_Os05g46620Os.7168.1.S1_at10/115+26907971..26911875Chaperone protein dnaJ 10, putative, expressed
LOC_Os05g46630Os.8550.1.S1_x_at11/115+26912470..26915901expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27341.1.S1_at--800--6751Chr05:26890460..26890484 (25 bp)
GTTCACGCTGCGCAGATCAGAAAGG
LOC_Os05g46600
OsAffx.27341.1.S1_at--427--5171Chr05:26890479..26890503 (25 bp)
GAAAGGCCCAACACATTTTGCCGGG
LOC_Os05g46600
OsAffx.27341.1.S1_at--267--8271Chr05:26890845..26890868 (24 bp)
GGCAGTCTTCGTCACACACATGCAC
LOC_Os05g46600
OsAffx.27341.1.S1_at--177--7631Chr05:26890900..26890924 (25 bp)
GGGACTTAAGCCTATTCTCATGTTT
LOC_Os05g46600
OsAffx.27341.1.S1_at--1060--2371Chr05:26890939..26890963 (25 bp)
AAACGACCTGGCACGCTAAGAAGAG
LOC_Os05g46600
OsAffx.27341.1.S1_at--274--3291Chr05:26890994..26891018 (25 bp)
CAAAGGGCGGTCTCTTGCTCCATGC
LOC_Os05g46600
OsAffx.27341.1.S1_at--877--2071Chr05:26891027..26891051 (25 bp)
ACATCGGACCAAGGCCGGGAACACT
LOC_Os05g46600
OsAffx.27341.1.S1_at--285--8411Chr05:26891039..26891063 (25 bp)
GGCCGGGAACACTTGTTGGACACGC
LOC_Os05g46600
OsAffx.27341.1.S1_at--80--10871Chr05:26891054..26891078 (25 bp)
TTGGACACGCAGTGGTTCCTCACGT
LOC_Os05g46600
OsAffx.27341.1.S1_at--710--10671Chr05:26891069..26891093 (25 bp)
TTCCTCACGTGCCAAGGGTCATGAC
LOC_Os05g46600
OsAffx.27341.1.S1_at--690--691Chr05:26891089..26891113 (25 bp)
ATGACCATGTCAAACCTACGGCGAC
LOC_Os05g46600
Target Sequence 
GTTCACGCTGCGCAGATCAGAAAGGCCCAACACATTTTGCCGGGCCACCCCCCGGTCCCGCACGACGCGCCGCCGTCAAA
TCCTCGTGCGCGGCCGGCCTAGCTGCCCCCCTTCCCCGGCGAGCACCGGTGCACGTCGCGGCAGTCTTCGTCACACACAT
GCACAAAGATAAATCATTGATTATAAACAAACAAAGGGACTTAAGCCTATTCTCATGTTTACAATTGAACGACCAAACGA
CCTGGCACGCTAAGAAGAGAGCGTTGGCGTCAAGGGATGGGCAAGACGCCAAAGGGCGGTCTCTTGCTCCATGCCTACAA
CCACATCGGACCAAGGCCGGGAACACTTGTTGGACACGCAGTGGTTCCTCACGTGCCAAGGGTCATGACCATGTCAAACC
TACGGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis