Browse Element(s) Details


OsAffx.27389.1.S1_at

Description tigr:9633.m04697
TID=OsAffx.27389.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4996011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49900Os.53085.1.S1_at11/115+28541952..28544278Fatty acid elongase, putative, expressed
LOC_Os05g49910Os.57367.1.S1_x_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.57367.1.S1_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.20347.1.S1_at8/115+28545588..28548920expressed protein
LOC_Os05g49920OsAffx.27388.1.S1_at11/115+28549790..28552533pentatricopeptide, putative, expressed
LOC_Os05g49930Os.47898.1.A1_at11/115+28557003..28558717GRAS family transcription factor containing protein, expressed
LOC_Os05g49940Os.27218.1.A1_at11/115+28564193..28564952expressed protein
LOC_Os05g49950NANA5+28566615..28567103hypothetical protein
LOC_Os05g49960OsAffx.27389.1.S1_at11/115+28568952..28569428hypothetical protein
LOC_Os05g49970Os.13493.1.S1_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed
LOC_Os05g49970Os.13493.1.S1_s_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed
LOC_Os05g49980Os.52474.1.S1_at11/115+28580017..28583324F-box domain containing protein, expressed
LOC_Os05g49990Os.32545.1.S1_at11/115+28583901..28585623expressed protein
LOC_Os05g50000OsAffx.15173.1.S1_x_at11/115+28588915..28590123hypothetical protein
LOC_Os05g50000OsAffx.15173.1.S1_at11/115+28588915..28590123hypothetical protein
LOC_Os05g50009NANA5+28591112..28591600NA
LOC_Os05g50020OsAffx.15174.1.S1_at11/115+28592944..28594149expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27389.1.S1_at--1082--1531Chr05:28568985..28569009 (25 bp)
AGCATCCAGATGTACTGGGCGCGGA
LOC_Os05g49960
OsAffx.27389.1.S1_at--691--8011Chr05:28569007..28569031 (25 bp)
GGAGGAACTACAGGCGCCTCGGCTC
LOC_Os05g49960
OsAffx.27389.1.S1_at--344--8351Chr05:28569078..28569102 (25 bp)
GGCGGCGCGCGGAGCACGAAGGACG
LOC_Os05g49960
OsAffx.27389.1.S1_at--960--8711Chr05:28569124..28569148 (25 bp)
TGTCGTCCTGGAACGCCCGGGCGGC
LOC_Os05g49960
OsAffx.27389.1.S1_at--837--4671Chr05:28569156..28569180 (25 bp)
GCGGTGCTACTGTCGCCGCTGCGGC
LOC_Os05g49960
OsAffx.27389.1.S1_at--147--3851Chr05:28569180..28569204 (25 bp)
CTGATGGCGAGGATCCGGGACGCGT
LOC_Os05g49960
OsAffx.27389.1.S1_at--934--531Chr05:28569192..28569216 (25 bp)
ATCCGGGACGCGTACGTCGACGCGA
LOC_Os05g49960
OsAffx.27389.1.S1_at--69--4571Chr05:28569246..28569270 (25 bp)
GCGCTGTCCAGGTCGCGGTCGCGGA
LOC_Os05g49960
OsAffx.27389.1.S1_at--495--3931Chr05:28569344..28569368 (25 bp)
CGGCGACTTCGAGCGGCGGATGATG
LOC_Os05g49960
OsAffx.27389.1.S1_at--570--8071Chr05:28569368..28569392 (25 bp)
GGAGCACATCTACAACATGATCGTC
LOC_Os05g49960
OsAffx.27389.1.S1_at--377--2091Chr05:28569373..28569397 (25 bp)
ACATCTACAACATGATCGTCACGCC
LOC_Os05g49960
Target Sequence 
AGCATCCAGATGTACTGGGCGCGGAGGAACTACAGGCGCCTCGGCTCGCCGCCGTCGCGGCACCTCCGCGTGGCGCGCCT
CGGCGGCGGCGCTGGCGGCGCGCGGAGCACGAAGGACGCCGCCGTCCGGCGCGGGCGCCTGTCGTCCTGGAACGCCCGGG
CGGCGGCGCGCGCGGTGCTACTGTCGCCGCTGCGGCTGATGGCGAGGATCCGGGACGCGTACGTCGACGCGATGCTGGCG
CTGGCCGCCGGAGGCGGCGCCGCGCTGTCCAGGTCGCGGTCGCGGAGCTGCGCGGCGACGGAGGCGGCGGCCGGGCTGCT
GGACAGGCGGGTGCCGCGGGCGCGCCTGCAGGGGAACGGCGGCGACTTCGAGCGGCGGATGATGGAGCACATCTACAACA
TGATCGTCACGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis