Browse Element(s) Details


OsAffx.27406.1.S1_at

Description tigr:9633.m04866
TID=OsAffx.27406.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=retroelement, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5158011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51550OsAffx.15198.1.S1_x_at11/115+29471513..29476608expressed protein
LOC_Os05g51550Os.54721.1.A1_at10/115+29471513..29476608expressed protein
LOC_Os05g51560Os.21837.1.S1_at11/115+29487871..29492718Casein kinase I, delta isoform, putative, expressed
LOC_Os05g51570Os.50784.1.S1_at11/115+29495779..29497300Vacuolar processing enzyme precursor, putative, expressed
LOC_Os05g51580OsAffx.27406.1.S1_at11/115+29500557..29501019hypothetical protein
LOC_Os05g51590Os.10294.1.S1_at11/115+29501485..29502876B2 protein, putative, expressed
LOC_Os05g51610Os.27828.1.S1_a_at11/115+29505383..29510567Vacuolar cation/proton exchanger 1b, putative, expressed
LOC_Os05g51620Os.19034.1.S1_at11/115+29512303..29518084expressed protein
LOC_Os05g51620Os.50278.2.S1_at1/115+29512303..29518084expressed protein
LOC_Os05g51630Os.10391.1.S1_a_at11/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51630Os.2259.1.S1_s_at1/115+29524916..29533060early-responsive to dehydration protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27406.1.S1_at--100--2211Chr05:29500952..29500976 (25 bp)
ACAACACCTGGCTGTCATCCTTTAG
LOC_Os05g51580
OsAffx.27406.1.S1_at--419--7131Chr05:29500939..29500963 (25 bp)
GTCATCCTTTAGACAGATAACAGAT
LOC_Os05g51580
OsAffx.27406.1.S1_at--496--6471Chr05:29500924..29500948 (25 bp)
GATAACAGATGTTGAAACTCTTCAT
LOC_Os05g51580
OsAffx.27406.1.S1_at--492--3751Chr05:29500907..29500931 (25 bp)
CTCTTCATGAGCTAGTACAACTTGG
LOC_Os05g51580
OsAffx.27406.1.S1_at--489--7031Chr05:29500893..29500917 (25 bp)
GTACAACTTGGAAGTTTACTCACAC
LOC_Os05g51580
OsAffx.27406.1.S1_at--37--6831Chr05:29500880..29500904 (25 bp)
GTTTACTCACACAAATCACTCTCAT
LOC_Os05g51580
OsAffx.27406.1.S1_at--747--2191Chr05:29500870..29500894 (25 bp)
ACAAATCACTCTCATTGAAACTGGG
LOC_Os05g51580
OsAffx.27406.1.S1_at--1102--10811Chr05:29500835..29500859 (25 bp)
TTGTGTGGACAAGAAATGCTGCAGG
LOC_Os05g51580
OsAffx.27406.1.S1_at--594--7571Chr05:29500612..29500636 (25 bp)
GGGCGCTTTTGAAGACTCTGATCAT
LOC_Os05g51580
OsAffx.27406.1.S1_at--585--10751Chr05:29500604..29500628 (25 bp)
TTGAAGACTCTGATCATCTATTCAG
LOC_Os05g51580
OsAffx.27406.1.S1_at--1028--431Chr05:29500589..29500613 (25 bp)
ATCTATTCAGAGGATGTGATCTCAC
LOC_Os05g51580
Target Sequence 
ACAACACCTGGCTGTCATCCTTTAGACAGATAACAGATGTTGAAACTCTTCATGAGCTAGTACAACTTGGAAGTTTACTC
ACACAAATCACTCTCATTGAAACTGGGGAAGATAATATTGTGTGGACAAGAAATGCTGCAGGGGCGCTTTTGAAGACTCT
GATCATCTATTCAGAGGATGTGATCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis