Browse Element(s) Details


OsAffx.27437.1.S1_at

Description tigr:9634.m00213
TID=OsAffx.27437.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0307011/11hypothetical protein
LOC_Os06g0311010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03020OsAffx.27433.1.S1_at11/116+1109267..1109749hypothetical protein
LOC_Os06g03030OsAffx.27434.1.S1_at11/116+1111554..1112189expressed protein
LOC_Os06g03040OsAffx.27435.1.S1_at11/116+1115676..1116332hypothetical protein
LOC_Os06g03050OsAffx.15240.1.S1_at11/116+1124359..1126805expressed protein
LOC_Os06g03059Os.52099.1.S1_at11/116+1127840..1128809expressed protein
LOC_Os06g03070OsAffx.27437.1.S1_at11/116+1131268..1131867hypothetical protein
LOC_Os06g03080Os.50769.1.A1_at7/116+1136135..1137863expressed protein
LOC_Os06g03090NANA6+1141381..1142186hypothetical protein
LOC_Os06g03099Os.52099.1.S1_at7/116+1142888..1143568hypothetical protein
LOC_Os06g03110OsAffx.27437.1.S1_at10/116+1144639..1145184hypothetical protein
LOC_Os06g03120Os.50769.1.A1_at5/116+1152607..1154129Aspartic proteinase nepenthesin-2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27437.1.S1_at--850--4391Chr06:1131304..1131328 (25 bp)
GCCAAGCACTACATCATGGCGGCCA
LOC_Os06g03070
OsAffx.27437.1.S1_at--156--1652Chr06:1144702..1144726 (25 bp)
AGCCCGACGCGGATATCCTTCTCGG
LOC_Os06g03110
OsAffx.27437.1.S1_at--1088--4652Chr06:1144710..1144734 (25 bp)
GCGGATATCCTTCTCGGTCACCGGC
LOC_Os06g03110
OsAffx.27437.1.S1_at--155--7692Chr06:1144823..1144847 (25 bp)
GGGTGCAGTACCTCGCCTTCGCGGT
LOC_Os06g03110
OsAffx.27437.1.S1_at--434--4452Chr06:1144837..1144861 (25 bp)
GCCTTCGCGGTGAGCTTGCAGCAGT
LOC_Os06g03110
OsAffx.27437.1.S1_at--728--5032Chr06:1144857..1144881 (25 bp)
GCAGTTCACCGCGAGGAACAGGATG
LOC_Os06g03110
OsAffx.27437.1.S1_at--806--9672Chr06:1144862..1144886 (25 bp)
TCACCGCGAGGAACAGGATGGAGTC
LOC_Os06g03110
OsAffx.27437.1.S1_at--663--5612Chr06:1145045..1145069 (25 bp)
GACAGGTAAGGTTCAAGGTCTGGCT
LOC_Os06g03110
OsAffx.27437.1.S1_at--1127--2892Chr06:1145052..1145076 (25 bp)
AAGGTTCAAGGTCTGGCTGGCCTAC
LOC_Os06g03110
OsAffx.27437.1.S1_at--835--3212Chr06:1145058..1145082 (25 bp)
CAAGGTCTGGCTGGCCTACTCCAGG
LOC_Os06g03110
OsAffx.27437.1.S1_at--140--9912Chr06:1145074..1145098 (25 bp)
TACTCCAGGCCGTACGACGTCGCGG
LOC_Os06g03110
Target Sequence 
GCCAAGCACTACATCATGGCGGCCATCGCCGGAACCCTCGCCGCCAGCGCCATCGTCATCGTCACCTCCGTCGTCCTCAG
CCCGACGCGGATATCCTTCTCGGTCACCGGCGGCGGCGCGTCCATCAGCCNTTCCGCCGGCGGCCAGGCGTTTCTCCTCA
ACCTCACCATCGCCGCCGACAACCCCAGCCACCGGGCCGGGGTGCAGTACCTCGCCTTCGCGGTGAGCTTGCAGCAGTTC
ACCGCGAGGAACAGGATGGAGTCGGTGGAGGCGACGGTCCAAGANGGCGTCCCGTTCTACCAGCCGCCGGCGAGCTCGAG
GANCGTGCTCGTGACGGNGCNGCTCGTCNACAAGAACTTCTTCGGCGCCAGCCATGGCGGCGGCGGCGGCNNNAGAGGCC
CTCCGNTCACCGTGGTGGTGAGAGGACAGGTAAGGTTCAAGGTCTGGCTGGCCTACTCCAGGCCGTACGACGTCGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis