Browse Element(s) Details


OsAffx.27445.1.S1_x_at

Description gb:NM_185477.1
DB_XREF= gi:34898039
GEN=OSJNBa0038F22.18
TID=OsAffx.27445.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0038F22.18 (OSJNBa0038F22.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0374011/11Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g026104/11hypothetical protein
LOC_Os03g061901/113'-5' exonuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03690Os.5600.1.S1_s_at11/116+1454386..1457554RNA recognition motif family protein, expressed
LOC_Os06g03690OsAffx.27444.1.S1_at11/116+1454386..1457554RNA recognition motif family protein, expressed
LOC_Os06g03700Os.34161.2.S1_x_at11/116+1458769..1463334oligopeptide transporter 9, putative, expressed
LOC_Os06g03700Os.34161.1.S1_a_at11/116+1458769..1463334oligopeptide transporter 9, putative, expressed
LOC_Os06g03700Os.34161.1.S1_at11/116+1458769..1463334oligopeptide transporter 9, putative, expressed
LOC_Os06g03710Os.31950.1.S1_at11/116+1464501..1467594GRAS family transcription factor containing protein, expressed
LOC_Os06g03720Os.9043.1.S1_at11/116+1469866..1471141Ribonucleoside-diphosphate reductase small chain, putative, expressed
LOC_Os06g03740OsAffx.27445.1.S1_at11/116+1475240..1476237Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03740OsAffx.27445.1.S1_x_at11/116+1475240..1476237Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03740OsAffx.27445.2.S1_x_at7/116+1475240..1476237Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03750Os.44810.1.S1_at11/116+1478059..1484508dehydration-responsive family protein, putative, expressed
LOC_Os06g03750Os.52574.2.S1_x_at1/116+1478059..1484508dehydration-responsive family protein, putative, expressed
LOC_Os06g03760Os.4272.1.S1_a_at11/116+1484975..1489635LMBR1 integral membrane family protein, putative, expressed
LOC_Os06g03770Os.10814.1.S1_a_at11/116+1491885..1501584ATP-binding cassette sub-family B member 7, mitochondrial, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
GO:0008408molecular_function3'-5' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27445.1.S1_x_at--1000--8451Chr06:1475604..1475628 (25 bp)
TGGCCGCCGACATCGGAGACGAGCT
LOC_Os06g03740
OsAffx.27445.1.S1_x_at--578--5991Chr06:1475619..1475729 (25 bp)
GAGACGAGCTCCAAGTGCCGACGTT
LOC_Os06g03740
OsAffx.27445.1.S1_x_at--910--9171Chr06:1475718..1475738 (21 bp)
TCCAAGTGCCGACGTTTCTGTACGG
LOC_Os06g03740
OsAffx.27445.1.S1_x_at--831--4091Chr06:1475723..1475747 (25 bp)
CGACGTTTCTGTACGGCGCGGCGCA
LOC_Os06g03740
OsAffx.27445.1.S1_x_at--1092--9632Chr06:1475774..1475798 (25 bp)
TCAGGAGGCAGCTCGGCTACTTCAA
LOC_Os06g03740
OsAffx.27445.1.S1_x_at--414--7191Chr06:1475908..1475932 (25 bp)
GTCGGCGCCACCAGCTGGGTCGACA
LOC_Os06g03740
OsAffx.27445.1.S1_x_at--832--4713Chr06:1475921..1475945 (25 bp)
GCTGGGTCGACAACTACAACGTGCC
LOC_Os06g03740
OsAffx.27445.1.S1_x_at--699--8552Chr06:1476059..1476083 (25 bp)
TGGAGGTCGCCTGCAACCTGCTCGA
LOC_Os06g03740
OsAffx.27445.1.S1_x_at--430--3772Chr06:1476148..1476172 (25 bp)
CTCTCCGTCGGCAAGGGATATTTCA
LOC_Os06g03740
OsAffx.27445.1.S1_x_at--258--8231Chr06:1476157..1476181 (25 bp)
GGCAAGGGATATTTCACTGATTTTT
LOC_Os06g03740
OsAffx.27445.1.S1_x_at--904--10371Chr06:1476178..1476202 (25 bp)
TTTTCCCAGGATAAAATCGTCGACT
LOC_Os06g03740
Target Sequence 
TGGCCGCCGACATCGGAGACGAGCTCCAAGTGCCGACGTTTCTGTACGGCGCGGCGCACCGGGAGGGGAGGACGCTGGCC
TCCATCAGGAGGCAGCTCGGCTACTTCAAGCCCAACTCCTCCGGCGACCAATGGCGGGGAGCGCCGGAGACGGACGCCCT
GCCCGTCGCCCCTGACGCCGGGCCGGAGAGGCCGCCGAGATCCAAGGGCGTGGTGGTCGTCGGCGCCACCAGCTGGGTCG
ACAACTACAACGTGCCCGTCCACACCGGCGACGTGGAGGCGGCGAGGCGGATCGCCCGCGCCGTCAGCGAGCGCGGCGGC
GGGCTCCCGTCCGTGCAGGCGATGGGGCTCGCGCACGGCGGCGGCGTCGTGGAGGTCGCCTGCAACCTGCTCGACCCGGC
GAGGGTCGGGGCCGAGCAGGTGCAGGGCATGGTGGAGCGGCTCGCCGCCGGCGAGGGCCTCTCCGTCGGCAAGGGATATT
TCACTGATTTTTCCCAGGATAAAATCGTCGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27445.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis