Browse Element(s) Details


OsAffx.27456.1.S1_at

Description tigr:9634.m00375
TID=OsAffx.27456.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g045903/11Auxin responsive protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04560Os.48368.1.S1_s_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560Os.48368.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560OsAffx.15262.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04570OsAffx.27455.1.S1_at11/116+1986292..1987387hypothetical protein
LOC_Os06g04580OsAffx.15263.1.S1_at10/116+1989030..1992736YEATS family protein, expressed
LOC_Os06g04580Os.10792.1.S1_at10/116+1989030..1992736YEATS family protein, expressed
LOC_Os06g04590OsAffx.27456.1.S1_at3/116+1999174..1999570Auxin responsive protein, expressed
LOC_Os06g04600Os.15940.1.S1_at11/116+1999873..2008069Brix domain containing protein, expressed
LOC_Os06g04600Os.15940.2.S1_at6/116+1999873..2008069Brix domain containing protein, expressed
LOC_Os06g04610Os.5449.1.S2_at11/116+2008997..2014660ribosome-binding factor A, chloroplast precursor, putative, expressed
LOC_Os06g04610Os.5449.1.S1_at11/116+2008997..2014660ribosome-binding factor A, chloroplast precursor, putative, expressed
LOC_Os06g04620Os.49218.1.S1_at11/116+2016779..2018352GDP-mannose 4,6 dehydratase 1, putative, expressed
LOC_Os06g04630OsAffx.15264.1.S1_at11/116+2020817..2021420hypothetical protein
LOC_Os06g04640Os.11713.2.S1_x_at11/116+2022358..2027120DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os06g04640Os.11713.2.S1_at11/116+2022358..2027120DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os06g04640Os.11713.1.S1_x_at5/116+2022358..2027120DNA-binding bromodomain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27456.1.S1_at--1074--5031Chr06:1999246..1999270 (25 bp)
GCAGATACTGAAGCGGTGCTCGAGC
LOC_Os06g04590
OsAffx.27456.1.S1_at--425--1451Chr06:1999293..1999317 (25 bp)
AGAAGCAGGTCAGCGAGTGGGAGGA
LOC_Os06g04590
OsAffx.27456.1.S1_at--296--891Chr06:1999326..1999350 (25 bp)
AGGCGTCCGGCTTGCCGTCCGACGT
LOC_Os06g04590
OsAffx.27456.1.S1_at--444--8351NONE
GGCGGCCGCGTTTGTAGCCACTAGC
NONE
OsAffx.27456.1.S1_at--1008--4511Chr06:2000438..2000457 (20 bp)
GCCGCGTTTGTAGCCACTAGCAAAG
NONE
OsAffx.27456.1.S1_at--732--3311Chr06:2000447..2000471 (25 bp)
CACTAGCAAAGGACGGAAGGACCTC
NONE
OsAffx.27456.1.S1_at--836--8111Chr06:2000457..2000481 (25 bp)
GGACGGAAGGACCTCATGTTACTTA
NONE
OsAffx.27456.1.S1_at--123--8211Chr06:2000461..2000485 (25 bp)
GGAAGGACCTCATGTTACTTAACGT
NONE
OsAffx.27456.1.S1_at--899--8091Chr06:2000465..2000489 (25 bp)
GGACCTCATGTTACTTAACGTACTG
NONE
OsAffx.27456.1.S1_at--785--731Chr06:2000472..2000496 (25 bp)
ATGTTACTTAACGTACTGCGTCAAT
NONE
OsAffx.27456.1.S1_at--987--9791Chr06:2000480..2000504 (25 bp)
TAACGTACTGCGTCAATTTGATGCC
NONE
Target Sequence 
GCAGATACTGAAGCGGTGCTCGAGCCTGGGGCGGCGGCAGCAGGAGCAGAAGCAGGTCAGCGAGTGGGAGGAGGAGGAGG
AGGCGTCCGGCTTGCCGTCCGACGTGCCGAGGGGCCACTTCGCGGTGTACGTCGGCCGAGCGGCGGCCGCGTTTGTAGCC
ACTAGCAAAGGACGGAAGGACCTCATGTTACTTAACGTACTGCGTCAATTTGATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis