Browse Element(s) Details

OsAffx.27487.1.S1_at

Description

tigr:9634.m00659
TID=OsAffx.27487.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07270	10/11	hypothetical protein
LOC_Os07g12300	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07230	Os.9247.2.S1_x_at	11/11	6	+	3459182..3464374	Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07230	Os.9247.1.S1_at	9/11	6	+	3459182..3464374	Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07240	NA	NA	6	+	3467971..3468919	expressed protein
LOC_Os06g07250	Os.22995.1.S1_at	1/11	6	+	3469796..3474964	Protein GOS9, putative, expressed
LOC_Os06g07260	OsAffx.4749.1.S1_x_at	11/11	6	+	3476114..3476404	wall-associated kinase, putative
LOC_Os06g07260	OsAffx.4749.1.S1_at	11/11	6	+	3476114..3476404	wall-associated kinase, putative
LOC_Os06g07270	OsAffx.27487.1.S1_at	10/11	6	+	3482626..3483957	hypothetical protein
LOC_Os06g07270	OsAffx.16226.1.S1_at	4/11	6	+	3482626..3483957	hypothetical protein
LOC_Os06g07280	OsAffx.27488.1.S1_at	11/11	6	+	3488967..3489803	Tubulin beta-1 chain, putative
LOC_Os06g07290	NA	NA	6	+	3493534..3499016	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07300	Os.22995.1.S1_at	5/11	6	+	3503058..3507741	Protein GOS9, putative
LOC_Os06g07300	Os.11426.2.S1_x_at	1/11	6	+	3503058..3507741	Protein GOS9, putative
LOC_Os06g07320	NA	NA	6	+	3508676..3513721	retrotransposon protein, putative, unclassified

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27487.1.S1_at--967--843	2	Chr07:6918269..6918340 (25 bp)	GGCCATTCTCGGGTCGCATTGCGTT	LOC_Os07g12300
OsAffx.27487.1.S1_at--579--71	1	NONE	ATGATGCTTATGATACTTGGCTGTT	NONE
OsAffx.27487.1.S1_at--599--361	1	Chr06:3482795..3482817 (23 bp)	CTTGGCTGTTGAATCGGAGCTACAC	LOC_Os06g07270
OsAffx.27487.1.S1_at--54--879	1	Chr06:3482789..3482813 (25 bp)	TGTTGAATCGGAGCTACACGAGGTT	LOC_Os06g07270
OsAffx.27487.1.S1_at--38--289	1	Chr06:3482736..3482760 (25 bp)	AAGGGCAGCGATGGTACCGTGTCTC	LOC_Os06g07270
OsAffx.27487.1.S1_at--514--507	1	Chr06:3482732..3482756 (25 bp)	GCAGCGATGGTACCGTGTCTCTGAT	LOC_Os06g07270
OsAffx.27487.1.S1_at--424--625	1	Chr06:3482727..3482751 (25 bp)	GATGGTACCGTGTCTCTGATGGCGA	LOC_Os06g07270
OsAffx.27487.1.S1_at--678--257	1	Chr06:3482694..3482718 (25 bp)	AACGGACAGCGATGGTGGCTAGCCC	LOC_Os06g07270
OsAffx.27487.1.S1_at--339--813	1	Chr06:3482691..3482715 (25 bp)	GGACAGCGATGGTGGCTAGCCCTCC	LOC_Os06g07270
OsAffx.27487.1.S1_at--846--737	1	Chr06:3482663..3482687 (25 bp)	GTGACGGCGAGCCAGTTCATCCCGT	LOC_Os06g07270
OsAffx.27487.1.S1_at--364--407	1	Chr06:3482656..3482680 (25 bp)	CGAGCCAGTTCATCCCGTGACCGTG	LOC_Os06g07270

Target Sequence

GGCCATTCTCGGGTCGCATTGCGTTCTTGGTATGTTCATGATGCTTATGATACTTGGCTGTTGAATCGGAGCTACACGAG
GTTGGCGGAGACAATGGAGTTGGTGGTGGCGAAGGGCAGCGATGGTACCGTGTCTCTGATGGCGAGGGCTGGCAACGGAC
AGCGATGGTGGCTAGCCCTCCCCCGTGACGGCGAGCCAGTTCATCCCGTGACCGTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis