Browse Element(s) Details

OsAffx.27496.1.S1_at

Description

gb:NM_185680.1
DB_XREF= gi:34898445
TID=OsAffx.27496.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Similar to Zea mays putative AC9 transposase. (P03010) (Gene), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07810	11/11	hAT family dimerisation domain containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07770	OsAffx.22571.2.S1_x_at	11/11	6	+	3761999..3771827	expressed protein
LOC_Os06g07780	OsAffx.15303.1.S1_at	11/11	6	+	3772673..3775481	Synaptobrevin family protein, expressed
LOC_Os06g07780	OsAffx.15303.1.S1_s_at	11/11	6	+	3772673..3775481	Synaptobrevin family protein, expressed
LOC_Os06g07780	Os.3539.1.S1_at	10/11	6	+	3772673..3775481	Synaptobrevin family protein, expressed
LOC_Os06g07790	Os.33661.2.S1_at	5/11	6	+	3778654..3784952	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07790	Os.51788.2.S1_at	2/11	6	+	3778654..3784952	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07790	OsAffx.2816.1.S1_at	2/11	6	+	3778654..3784952	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07800	OsAffx.27496.2.S1_x_at	11/11	6	+	3787063..3788805	hypothetical protein
LOC_Os06g07800	OsAffx.27496.2.S1_at	11/11	6	+	3787063..3788805	hypothetical protein
LOC_Os06g07810	OsAffx.27496.1.S1_at	11/11	6	+	3791148..3793775	hAT family dimerisation domain containing protein
LOC_Os06g07810	OsAffx.27496.1.S1_x_at	11/11	6	+	3791148..3793775	hAT family dimerisation domain containing protein
LOC_Os06g07820	Os.16410.1.S1_s_at	11/11	6	+	3794469..3797624	BSD domain containing protein, expressed
LOC_Os06g07830	Os.10137.1.S1_a_at	11/11	6	+	3800241..3806767	Clathrin assembly protein, putative, expressed
LOC_Os06g07840	OsAffx.4759.1.S1_at	11/11	6	+	3809432..3809635	hypothetical protein
LOC_Os06g07850	Os.46012.2.S1_x_at	11/11	6	+	3812490..3818641	retrotransposon protein, putative, unclassified
LOC_Os06g07850	Os.46012.3.S1_x_at	7/11	6	+	3812490..3818641	retrotransposon protein, putative, unclassified
LOC_Os06g07850	Os.27088.1.A1_x_at	6/11	6	+	3812490..3818641	retrotransposon protein, putative, unclassified
LOC_Os06g07850	Os.54691.1.S1_x_at	3/11	6	+	3812490..3818641	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27496.1.S1_at--654--593	1	Chr06:3791584..3791608 (25 bp)	GAGCATCGTAGTCGGCTCACTTCTA	LOC_Os06g07810
OsAffx.27496.1.S1_at--677--49	1	Chr06:3791588..3791612 (25 bp)	ATCGTAGTCGGCTCACTTCTAAGTT	LOC_Os06g07810
OsAffx.27496.1.S1_at--347--399	1	Chr06:3791590..3791614 (25 bp)	CGTAGTCGGCTCACTTCTAAGTTGT	LOC_Os06g07810
OsAffx.27496.1.S1_at--233--1007	1	Chr06:3791592..3791616 (25 bp)	TAGTCGGCTCACTTCTAAGTTGTTA	LOC_Os06g07810
OsAffx.27496.1.S1_at--422--719	1	Chr06:3791594..3791618 (25 bp)	GTCGGCTCACTTCTAAGTTGTTAGA	LOC_Os06g07810
OsAffx.27496.1.S1_at--786--123	1	Chr06:3791609..3791633 (25 bp)	AGTTGTTAGAAGCTCTAATGTGCCA	LOC_Os06g07810
OsAffx.27496.1.S1_at--837--1045	1	Chr06:3791614..3791638 (25 bp)	TTAGAAGCTCTAATGTGCCAACAGG	LOC_Os06g07810
OsAffx.27496.1.S1_at--372--145	1	Chr06:3791616..3791640 (25 bp)	AGAAGCTCTAATGTGCCAACAGGAT	LOC_Os06g07810
OsAffx.27496.1.S1_at--1102--269	1	Chr06:3791618..3791642 (25 bp)	AAGCTCTAATGTGCCAACAGGATTG	LOC_Os06g07810
OsAffx.27496.1.S1_at--270--977	1	Chr06:3791624..3791648 (25 bp)	TAATGTGCCAACAGGATTGGCTTCG	LOC_Os06g07810
OsAffx.27496.1.S1_at--92--469	1	Chr06:3793397..3793421 (25 bp)	GCGGCCTTATTGGACACCGCCGCCT	LOC_Os06g07810

Target Sequence

GAGCATCGTAGTCGGCTCACTTCTAAGTTGTTAGAAGCTCTAATGTGCCAACAGGATTGGCTTCGAAACAAGTACAAAGN
NNNNGANGNAGANAGGNNACNNAGANCANNGNNTNCNNTNGNNCNNGNCTNCANNNCANNTNNNNGNNGGNNNNCANCCA
AGCCGCTGGTCGCGGCCTTATTGGACACCGCCGCCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis