Browse Element(s) Details


OsAffx.27508.71.S1_s_at

Description gb:AK107285.1
DB_XREF= gi:32992494
TID=OsAffx.27508.71
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-B05, full insert sequence.
FL= gb:AK107285.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5569011/11Glutelin type-A 1 precursor, putative, expressed
LOC_Os10g260602/11Glutelin type-A 2 precursor, putative, expressed
LOC_Os01g556301/11Glutelin type-A 3 precursor, putative
LOC_Os03g313601/11Glutelin type-A 3 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55630OsAffx.11615.1.S1_at11/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.8013.1.S1_at3/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.22346.1.S1_x_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630OsAffx.27508.71.S1_s_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.12807.2.S1_x_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55640NANA1+32384003..32384981Seven in absentia protein family protein
LOC_Os01g55650Os.13102.1.S1_at11/111+32384248..32389677patatin, putative, expressed
LOC_Os01g55650Os.13102.1.S2_at5/111+32384248..32389677patatin, putative, expressed
LOC_Os01g55660NANA1+32392337..32396694retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g55670NANA1+32397767..32398923expressed protein
LOC_Os01g55690Os.22346.1.S1_x_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690OsAffx.27508.71.S1_s_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.22346.2.S1_x_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.12807.2.S1_x_at4/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.16515.1.S1_x_at2/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55700NANA1+32406246..32409194NLI interacting factor-like phosphatase family protein
LOC_Os01g55710Os.54916.1.S1_at1/111+32409864..32410541hypothetical protein
LOC_Os01g55720Os.16746.1.S1_at11/111+32415117..32415884expressed protein
LOC_Os01g55720Os.16746.1.S1_x_at11/111+32415117..32415884expressed protein
LOC_Os01g55730Os.10016.1.S1_a_at10/111+32418474..32420989expressed protein
LOC_Os01g55740Os.42060.1.S1_at10/111+32421251..32425563Rhomboid family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27508.71.S1_s_at--436--8172Chr01:32404999..32405023 (25 bp)
GGAACATCAACGCTCACAGCGTCGT
LOC_Os01g55690
OsAffx.27508.71.S1_s_at--89--5492Chr01:32405000..32405024 (25 bp)
GAACATCAACGCTCACAGCGTCGTG
LOC_Os01g55690
OsAffx.27508.71.S1_s_at--348--2091Chr01:32405002..32405026 (25 bp)
ACATCAACGCTCACAGCGTCGTGTA
LOC_Os01g55690
OsAffx.27508.71.S1_s_at--989--371Chr01:32405004..32405028 (25 bp)
ATCAACGCTCACAGCGTCGTGTATA
LOC_Os01g55690
OsAffx.27508.71.S1_s_at--877--9711Chr01:32405005..32405029 (25 bp)
TCAACGCTCACAGCGTCGTGTATAT
LOC_Os01g55690
OsAffx.27508.71.S1_s_at--98--1831Chr01:32405008..32405032 (25 bp)
ACGCTCACAGCGTCGTGTATATTAC
LOC_Os01g55690
OsAffx.27508.71.S1_s_at--796--4131Chr01:32405009..32405033 (25 bp)
CGCTCACAGCGTCGTGTATATTACT
LOC_Os01g55690
OsAffx.27508.71.S1_s_at--454--4831Chr01:32405010..32405034 (25 bp)
GCTCACAGCGTCGTGTATATTACTC
LOC_Os01g55690
OsAffx.27508.71.S1_s_at--43--3751Chr01:32405011..32405035 (25 bp)
CTCACAGCGTCGTGTATATTACTCA
LOC_Os01g55690
OsAffx.27508.71.S1_s_at--961--9671Chr01:32405012..32405036 (25 bp)
TCACAGCGTCGTGTATATTACTCAA
LOC_Os01g55690
OsAffx.27508.71.S1_s_at--736--3253Chr03:17820650..17820671 (22 bp)
CAACAATGGAAAGACAGTGTTCAAC
LOC_Os03g31360
Target Sequence 
GGAACATCAACGCTCACAGCGTCGTGTATATTACTCAAGGCCGTGCCCGGGTTCAAGTTGTCAACAACAATGGAAAGACA
GTGTTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27508.71.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis