Browse Element(s) Details


OsAffx.27523.2.S1_at

Description tigr:9638.m02702
TID=OsAffx.27523.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3130011/11hypothetical protein
LOC_Os05g267405/11retrotransposon protein, putative, unclassified
LOC_Os02g067501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31250OsAffx.20295.1.S1_at11/1110+16059064..16064038expressed protein
LOC_Os10g31250OsAffx.28164.2.S1_at2/1110+16059064..16064038expressed protein
LOC_Os10g31250Os.52574.2.S1_x_at1/1110+16059064..16064038expressed protein
LOC_Os10g31280OsAffx.18472.1.S1_at11/1110+16077908..16078688hypothetical protein
LOC_Os10g31290Os.46672.1.S1_at11/1110+16079569..16086346expressed protein
LOC_Os10g31300OsAffx.27523.2.S1_at11/1110+16088727..16090054hypothetical protein
LOC_Os10g31310OsAffx.27523.3.S1_x_at11/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31310OsAffx.27523.3.S1_at11/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31310OsAffx.27523.4.S1_at3/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31320Os.51176.1.S1_at11/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31320Os.11040.1.S1_x_at10/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51848.1.S1_x_at11/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51929.1.S1_at9/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31340NANA10+16108759..16109793hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27523.2.S1_at--67--6491Chr10:16089923..16089947 (25 bp)
GATAGATGACTCAATGGCAATGACC
LOC_Os10g31300
OsAffx.27523.2.S1_at--746--691Chr10:16089904..16089928 (25 bp)
ATGACCAATGGAGCGGACCAGCCGT
LOC_Os10g31300
OsAffx.27523.2.S1_at--897--2951Chr10:16089898..16089922 (25 bp)
AATGGAGCGGACCAGCCGTCATCCT
LOC_Os10g31300
OsAffx.27523.2.S1_at--1115--10631Chr10:16089583..16089861 (25 bp)
TTCCCGCACCCTATGAAGGTGGTGG
LOC_Os10g31300
OsAffx.27523.2.S1_at--610--6472Chr05:15441982..15442006 (25 bp)
GATACAACCAGTAGGCATCTGCCCT
LOC_Os05g26740
OsAffx.27523.2.S1_at--786--3812Chr05:15442000..15442024 (25 bp)
CTGCCCTATCTGTGGTGTAAAGGAG
LOC_Os05g26740
OsAffx.27523.2.S1_at--807--2292Chr05:15442027..15442051 (25 bp)
AAATGGTTTCCATGCGACTGTTGAA
LOC_Os05g26740
OsAffx.27523.2.S1_at--86--6853Chr05:15442032..15442056 (25 bp)
GTTTCCATGCGACTGTTGAATGTAC
LOC_Os05g26740
OsAffx.27523.2.S1_at--265--10731Chr10:16088980..16089004 (25 bp)
TTGAATGTACAGTGGCGAGATCGTT
LOC_Os10g31300
OsAffx.27523.2.S1_at--323--1292Chr05:15442064..15442088 (25 bp)
AGATCGTTGCGAGAAGCCATCAGAG
LOC_Os05g26740
OsAffx.27523.2.S1_at--1130--2911Chr10:16088849..16088873 (25 bp)
AAGGCGCGTGTTTACACGGGCGCAA
LOC_Os10g31300
Target Sequence 
GATAGATGACTCAATGGCAATGACCAATGGAGCGGACCAGCCGTCATCCTCCTCGACCACACCGACCGTGCCATCCCCAA
CCAGCCTTCCCGCACCCTATGAAGGTGGTGGTGGCAGCGAGTTGGGGACGGCCGTGGCGACATCGACAAGGAGGGGAGAT
GGGAGAAGAGGTGGGGGTCGAGGAGAGGGATTGGTTGGAGGAGACGGGTATAAACGGAAAAGAAGGATACAACCAGTAGG
CATCTGCCCTATCTGTGGTGTAAAGGAGGAAAATGGTTTCCATGCGACTGTTGAATGTACAGTGGCGAGATCGTTGCGAG
AAGCCATCAGAGAGTTCTGGGCGCTACCGCCGGAAAGGAAGTTTGCTATGACTGGGCCTGACTGGCTCCTTGTCCTGTTG
GATAGCTTGAATAGTTCTGACAAGGCGCGTGTTTACACGGGCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27523.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis