Browse Element(s) Details


OsAffx.27542.1.S1_s_at

Description tigr:9634.m00972
TID=OsAffx.27542.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0999011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09950OsAffx.15341.1.S1_at11/116+5070901..5071113hypothetical protein
LOC_Os06g09960OsAffx.27541.1.S1_at10/116+5081730..5083092expressed protein
LOC_Os06g09960OsAffx.24432.1.S1_at3/116+5081730..5083092expressed protein
LOC_Os06g09970OsAffx.4783.1.S1_at11/116+5084604..5085091hypothetical protein
LOC_Os06g09980Os.54864.2.S1_at11/116+5089958..5091121expressed protein
LOC_Os06g09990OsAffx.27542.1.S1_s_at11/116+5096036..5096381hypothetical protein
LOC_Os06g09990Os.39031.1.S1_at5/116+5096036..5096381hypothetical protein
LOC_Os06g10000Os.55490.1.S1_at10/116+5101390..5102442expressed protein
LOC_Os06g10000Os.57449.1.S1_x_at1/116+5101390..5102442expressed protein
LOC_Os06g10010NANA6+5103666..5104193hypothetical protein
LOC_Os06g10020Os.56042.1.S1_at11/116+5105166..5105930expressed protein
LOC_Os06g10030NANA6+5108369..5108719hypothetical protein
LOC_Os06g10040NANA6+5117540..5117878hypothetical protein
LOC_Os06g10050NANA6+5120690..5121061hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27542.1.S1_s_at--324--10491Chr06:5096320..5096344 (25 bp)
TTACAGATGAAAGTAACAGAGCATT
LOC_Os06g09990
OsAffx.27542.1.S1_s_at--1118--7911Chr06:5096295..5096319 (25 bp)
GGTTGGACAGAGAGCCTCTCTCAAC
LOC_Os06g09990
OsAffx.27542.1.S1_s_at--1066--8131Chr06:5096291..5096315 (25 bp)
GGACAGAGAGCCTCTCTCAACTGGT
LOC_Os06g09990
OsAffx.27542.1.S1_s_at--985--1351Chr06:5096287..5096311 (25 bp)
AGAGAGCCTCTCTCAACTGGTCATG
LOC_Os06g09990
OsAffx.27542.1.S1_s_at--959--1371Chr06:5096285..5096309 (25 bp)
AGAGCCTCTCTCAACTGGTCATGGA
LOC_Os06g09990
OsAffx.27542.1.S1_s_at--779--1671Chr06:5096283..5096307 (25 bp)
AGCCTCTCTCAACTGGTCATGGAGA
LOC_Os06g09990
OsAffx.27542.1.S1_s_at--205--4471Chr06:5096282..5096306 (25 bp)
GCCTCTCTCAACTGGTCATGGAGAC
LOC_Os06g09990
OsAffx.27542.1.S1_s_at--1047--9511Chr06:5096279..5096303 (25 bp)
TCTCTCAACTGGTCATGGAGACTCT
LOC_Os06g09990
OsAffx.27542.1.S1_s_at--217--3751Chr06:5096276..5096300 (25 bp)
CTCAACTGGTCATGGAGACTCTCGT
LOC_Os06g09990
OsAffx.27542.1.S1_s_at--130--3271Chr06:5096274..5096298 (25 bp)
CAACTGGTCATGGAGACTCTCGTAT
LOC_Os06g09990
OsAffx.27542.1.S1_s_at--312--3911Chr06:5096271..5096295 (25 bp)
CTGGTCATGGAGACTCTCGTATGGA
LOC_Os06g09990
Target Sequence 
TTACAGATGAAAGTAACAGAGCATTGGTTGGACAGAGAGCCTCTCTCAACTGGTCATGGAGACTCTCGTATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27542.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis