Browse Element(s) Details


OsAffx.27652.1.S1_x_at

Description tigr:9634.m01566
TID=OsAffx.27652.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GASA5-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1562011/11GAST1 protein precursor, putative, expressed
LOC_Os09g248401/11GAST1 protein precursor, putative, expressed
LOC_Os06g123601/11RWP-RK domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15550OsAffx.15441.1.S1_at11/116+8820963..8822144hypothetical protein
LOC_Os06g15560Os.54514.1.S1_at3/116+8824457..8826102expressed protein
LOC_Os06g15560OsAffx.31349.2.S1_x_at1/116+8824457..8826102expressed protein
LOC_Os06g15570Os.37727.1.S1_at11/116+8825990..8831305retrotransposon protein, putative, unclassified, expressed
LOC_Os06g15580OsAffx.27649.1.S1_at9/116+8832274..8833387hypothetical protein
LOC_Os06g15590OsAffx.27650.1.S1_at11/116+8833949..8834630PGP224, putative
LOC_Os06g15600OsAffx.15442.1.S1_at11/116+8835979..8836908Chemocyanin precursor, putative
LOC_Os06g15610NANA6+8845792..8846093hypothetical protein
LOC_Os06g15620Os.18395.1.S1_s_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15620Os.48105.1.A1_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15620OsAffx.27652.1.S1_x_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15630NANA6+8853014..8854636retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15640Os.1709.1.S1_x_at11/116+8856882..8862471retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15640Os.31497.2.S1_x_at6/116+8856882..8862471retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15650Os.38751.1.A1_at9/116+8864337..8865720retrotransposon protein, putative, unclassified
LOC_Os06g15650Os.49802.1.S2_at1/116+8864337..8865720retrotransposon protein, putative, unclassified
LOC_Os06g15650OsAffx.28492.1.S1_at1/116+8864337..8865720retrotransposon protein, putative, unclassified
LOC_Os06g15660Os.54287.1.S1_at10/116+8867034..8868887expressed protein
LOC_Os06g15670OsAffx.27654.1.S1_at11/116+8871485..8873865hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27652.1.S1_x_at--188--2631Chr06:8847547..8847571 (25 bp)
AACCTGAGGCCGTGGGAGTGCTCGC
LOC_Os06g15620
OsAffx.27652.1.S1_x_at--71--6151Chr06:8847509..8847533 (25 bp)
GAGGTGCTCCAACACGCAGTACAAG
LOC_Os06g15620
OsAffx.27652.1.S1_x_at--442--1471Chr06:8847486..8847510 (25 bp)
AGAAGGCGTGCCTGACGTTCTGCAA
LOC_Os06g15620
OsAffx.27652.1.S1_x_at--847--7271Chr06:8847479..8847503 (25 bp)
GTGCCTGACGTTCTGCAACAAGTGC
LOC_Os06g15620
OsAffx.27652.1.S1_x_at--634--4031Chr06:8847471..8847495 (25 bp)
CGTTCTGCAACAAGTGCTGCGCCAA
LOC_Os06g15620
OsAffx.27652.1.S1_x_at--57--2871Chr06:8847460..8847484 (25 bp)
AAGTGCTGCGCCAAGTGCCTGTGCG
LOC_Os06g15620
OsAffx.27652.1.S1_x_at--117--3832Chr09:14829231..14829254 (24 bp)
CTGCCCCTGCTACAACAACTGGAAG
LOC_Os09g24840
OsAffx.27652.1.S1_x_at--288--5371Chr06:8847383..8847407 (25 bp)
GAAGACCAAGGAAGGCGGCCCCAAG
LOC_Os06g15620
OsAffx.27652.1.S1_x_at--434--5291Chr06:8847373..8847397 (25 bp)
GAAGGCGGCCCCAAGTGCCCCTAAG
LOC_Os06g15620
OsAffx.27652.1.S1_x_at--957--1131Chr06:8847360..8847384 (25 bp)
AGTGCCCCTAAGATGCATGCCTTTT
LOC_Os06g15620
OsAffx.27652.1.S1_x_at--433--6334Chr06:6699027..6699046 (20 bp)
GATGCATGCCTTTTTTTCTTTCTTC
LOC_Os06g12360
Target Sequence 
AACCTGAGGCCGTGGGAGTGCTCGCCCAAGTGCGCGGGGAGGTGCTCCAACACGCAGTACAAGAAGGCGTGCCTGACGTT
CTGCAACAAGTGCTGCGCCAAGTGCCTGTGCGTGCCGCCCGGCACCTACGGCAACAAGGGCGCCTGCCCCTGCTACAACA
ACTGGAAGACCAAGGAAGGCGGCCCCAAGTGCCCCTAAGATGCATGCCTTTTTTTCTTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27652.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis