Browse Element(s) Details


OsAffx.27654.1.S1_at

Description tigr:9634.m01573
TID=OsAffx.27654.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1567011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15620Os.18395.1.S1_s_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15620Os.48105.1.A1_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15620OsAffx.27652.1.S1_x_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15630NANA6+8853014..8854636retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15640Os.1709.1.S1_x_at11/116+8856882..8862471retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15640Os.31497.2.S1_x_at6/116+8856882..8862471retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15650Os.38751.1.A1_at9/116+8864337..8865720retrotransposon protein, putative, unclassified
LOC_Os06g15650Os.49802.1.S2_at1/116+8864337..8865720retrotransposon protein, putative, unclassified
LOC_Os06g15650OsAffx.28492.1.S1_at1/116+8864337..8865720retrotransposon protein, putative, unclassified
LOC_Os06g15660Os.54287.1.S1_at10/116+8867034..8868887expressed protein
LOC_Os06g15670OsAffx.27654.1.S1_at11/116+8871485..8873865hypothetical protein
LOC_Os06g15680OsAffx.24230.1.S1_at1/116+8875052..8876758Cytochrome P450 family protein
LOC_Os06g15680OsAffx.24230.1.S1_x_at1/116+8875052..8876758Cytochrome P450 family protein
LOC_Os06g15680Os.54620.1.A1_at1/116+8875052..8876758Cytochrome P450 family protein
LOC_Os06g15690Os.24746.1.S1_at11/116+8879085..8883818no apical meristem, putative, expressed
LOC_Os06g15700Os.19036.1.S1_at11/116+8890134..8902219expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27654.1.S1_at--729--1471Chr06:8872018..8872042 (25 bp)
AGAATATTATGCGAACACTCAAGGG
LOC_Os06g15670
OsAffx.27654.1.S1_at--450--9211Chr06:8872083..8872107 (25 bp)
TCCACAAGGCCGTCAGGTACCTCAA
LOC_Os06g15670
OsAffx.27654.1.S1_at--51--7131Chr06:8872094..8872118 (25 bp)
GTCAGGTACCTCAAGTTGCTCAAGG
LOC_Os06g15670
OsAffx.27654.1.S1_at--805--3971Chr06:8872135..8872159 (25 bp)
CGGTGTGCGTAGCTCAAGCAGCTAA
LOC_Os06g15670
OsAffx.27654.1.S1_at--1085--2711Chr06:8872150..8872174 (25 bp)
AAGCAGCTAAGTGTGCTACCGACAG
LOC_Os06g15670
OsAffx.27654.1.S1_at--282--2871Chr06:8872158..8872182 (25 bp)
AAGTGTGCTACCGACAGACCCGACA
LOC_Os06g15670
OsAffx.27654.1.S1_at--466--1371Chr06:8872173..8872197 (25 bp)
AGACCCGACATCGACAATGACCTTG
LOC_Os06g15670
OsAffx.27654.1.S1_at--175--2991Chr06:8872188..8872212 (25 bp)
AATGACCTTGCTCAACGGCTGACGG
LOC_Os06g15670
OsAffx.27654.1.S1_at--431--1591Chr06:8873025..8873049 (25 bp)
AGCTCGACAGCGTTGGAAGATCGGA
LOC_Os06g15670
OsAffx.27654.1.S1_at--48--9931Chr06:8873792..8873816 (25 bp)
TACGGGCTGGCCTGGTTCTTCCATA
LOC_Os06g15670
OsAffx.27654.1.S1_at--708--10551Chr06:8873807..8873831 (25 bp)
TTCTTCCATACTCAGGTCCACTAAT
LOC_Os06g15670
Target Sequence 
AGAATATTATGCGAACACTCAAGGGGATCATCCTGGCGGCAGCAAGATGGACGCGCCCACCGTCCTCCACAAGGCCGTCA
GGTACCTCAAGTTGCTCAAGGTGGAGGTCAAGAAGCTCGGTGTGCGTAGCTCAAGCAGCTAAGTGTGCTACCGACAGACC
CGACATCGACAATGACCTTGCTCAACGGCTGACGGGGACGCGGATGGAGTCAAGATGGAGAGGGCGGCGGTCAAAAGGGG
CCAGCACCGGCGTCGGTGGTGGCAAGGGAAGAGCGAGCGCGGTGGACACAATGGTGGTGTTGACGGGAGCTCGACAGCGT
TGGAAGATCGGAAGAGCGAGCGCGGTGTTGGCCTGTTGGGAAGATTTCGGCTCCGACTCCGGCGAGGGCATTGGTGGAAT
GCGGCGGCGGGGACACGTGAGGAGGAGCGAGGAGGCGCGGAGGCGGAGTCTTCGGACGGGCGAAAATCGCGGTCGTGGTG
GAGGAGGGGCTTGGTGGGCTGGTCCAGTAGGTAGGTTACGGGCTGGCCTGGTTCTTCCATACTCAGGTCCACTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis