Browse Element(s) Details


OsAffx.27689.1.S1_at

Description tigr:9634.m01774
TID=OsAffx.27689.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AF045033 nitrate-induced NOI protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g178709/11nitrate-induced NOI protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17840Os.9100.1.S2_at11/116+10343191..10357302HEAT repeat family protein, expressed
LOC_Os06g17840Os.9100.1.S1_at11/116+10343191..10357302HEAT repeat family protein, expressed
LOC_Os06g17840Os.9100.1.S3_at11/116+10343191..10357302HEAT repeat family protein, expressed
LOC_Os06g17850NANA6+10360910..10363598hypothetical protein
LOC_Os06g17860OsAffx.27688.1.S1_at11/116+10364751..10367451hypothetical protein
LOC_Os06g17870OsAffx.27689.1.S1_s_at11/116+10371361..10373625nitrate-induced NOI protein, putative
LOC_Os06g17870OsAffx.27689.1.S1_at9/116+10371361..10373625nitrate-induced NOI protein, putative
LOC_Os06g17880Os.50486.1.S1_at11/116+10374847..10379262NBS-LRR disease resistance protein, putative, expressed
LOC_Os06g17890OsAffx.15477.1.S1_at8/116+10381005..10382012hypothetical protein
LOC_Os06g17900OsAffx.15478.1.S1_at2/116+10386510..10389466NB-ARC domain containing protein
LOC_Os06g17910OsAffx.15478.3.S1_at11/116+10396098..10398254NBS-LRR disease resistance protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0010167biological_processresponse to nitrate
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27689.1.S1_at--344--10691NONE
TTCCAGGATTGTTGGCGGCCTCAAT
NONE
OsAffx.27689.1.S1_at--620--51NONE
ATTGTTGGCGGCCTCAATCAAATGC
NONE
OsAffx.27689.1.S1_at--899--6471Chr06:10373137..10373161 (24 bp)
GTTGGCGGCCTCAATCAAATGCCAG
LOC_Os06g17870
OsAffx.27689.1.S1_at--141--8491Chr06:10373138..10373163 (25 bp)
TGGCGGCCTCAATCAAATGCCAGCC
LOC_Os06g17870
OsAffx.27689.1.S1_at--62--3031Chr06:10373154..10373178 (25 bp)
AATGCCAGCCCACCCACGGGAAATG
LOC_Os06g17870
OsAffx.27689.1.S1_at--367--4351Chr06:10373163..10373187 (25 bp)
CCACCCACGGGAAATGGGCCAGGAT
LOC_Os06g17870
OsAffx.27689.1.S1_at--988--2291Chr06:10373174..10373198 (25 bp)
AAATGGGCCAGGATTGAGGCCTGCT
LOC_Os06g17870
OsAffx.27689.1.S1_at--1058--8411Chr06:10373179..10373203 (25 bp)
GGCCAGGATTGAGGCCTGCTGAACA
LOC_Os06g17870
OsAffx.27689.1.S1_at--395--1011Chr06:10373183..10373207 (25 bp)
AGGATTGAGGCCTGCTGAACAAGGT
LOC_Os06g17870
OsAffx.27689.1.S1_at--795--11Chr06:10373186..10373210 (25 bp)
ATTGAGGCCTGCTGAACAAGGTGTA
LOC_Os06g17870
OsAffx.27689.1.S1_at--104--8891Chr06:10373188..10373212 (25 bp)
TGAGGCCTGCTGAACAAGGTGTAGA
LOC_Os06g17870
Target Sequence 
TTCCAGGATTGTTGGCGGCCTCAATCAAATGCCAGCCCACCCACGGGAAATGGGCCAGGATTGAGGCCTGCTGAACAAGG
TGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis