Browse Element(s) Details


OsAffx.27726.2.S1_at

Description tigr:9637.m01774
TID=OsAffx.27726.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2073011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20684Os.56245.1.S1_at11/119+12453424..12459995Strictosidine synthase family protein, expressed
LOC_Os09g20700NANA9+12465522..12466997Strictosidine synthase family protein
LOC_Os09g20710OsAffx.29946.1.S1_at10/119+12474469..12476640RNA recognition motif family protein
LOC_Os09g20720NANA9+12483351..12483830Strictosidine synthase 1 precursor, putative
LOC_Os09g20730OsAffx.27726.2.S1_at11/119+12484713..12486169hypothetical protein
LOC_Os09g20730Os.55138.1.S1_x_at1/119+12484713..12486169hypothetical protein
LOC_Os09g20740OsAffx.6347.1.S1_at11/119+12493568..12497571Calcium binding EGF domain containing protein
LOC_Os09g20740Os.54747.1.S1_at1/119+12493568..12497571Calcium binding EGF domain containing protein
LOC_Os09g20750OsAffx.6348.1.S1_at11/119+12501624..12502148hypothetical protein
LOC_Os09g20760NANA9+12506674..12508442retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27726.2.S1_at--467--7891Chr09:12485622..12485646 (25 bp)
GGTTCATCGCCCTCGGTGTGCCCAA
LOC_Os09g20730
OsAffx.27726.2.S1_at--1153--4691Chr09:12485840..12485864 (25 bp)
GCGGCGGTCACAGCAGCGTCGGACG
LOC_Os09g20730
OsAffx.27726.2.S1_at--595--8471Chr09:12485883..12485907 (25 bp)
TGGCGAAGGTGCTCCGTGCACACAA
LOC_Os09g20730
OsAffx.27726.2.S1_at--883--5311Chr09:12485887..12485911 (25 bp)
GAAGGTGCTCCGTGCACACAAGGCG
LOC_Os09g20730
OsAffx.27726.2.S1_at--105--3811Chr09:12485894..12485918 (25 bp)
CTCCGTGCACACAAGGCGCTCGGGT
LOC_Os09g20730
OsAffx.27726.2.S1_at--959--3771Chr09:12485912..12485936 (25 bp)
CTCGGGTGGAGCACTGGCGACCCTT
LOC_Os09g20730
OsAffx.27726.2.S1_at--926--10691Chr09:12485935..12485959 (25 bp)
TTGCTCTCCGTCCAAGGCCTGGCGT
LOC_Os09g20730
OsAffx.27726.2.S1_at--824--4791Chr09:12486028..12486052 (25 bp)
GCTCTGCTGCGAGGAAAGAAGAAAG
LOC_Os09g20730
OsAffx.27726.2.S1_at--283--9791Chr09:12486061..12486085 (25 bp)
TAGAGAAAGGAAGAACGGTGTCCAG
LOC_Os09g20730
OsAffx.27726.2.S1_at--1062--10571Chr09:12486112..12486136 (25 bp)
TTCTCTCTCTATCTCGACCGGAAAT
LOC_Os09g20730
OsAffx.27726.2.S1_at--382--9511Chr09:12486115..12486139 (25 bp)
TCTCTCTATCTCGACCGGAAATAAT
LOC_Os09g20730
Target Sequence 
GGTTCATCGCCCTCGGTGTGCCCAACAGCAGCAACACGGCGGCCGGCTTCTCGTTCACTCCGATGCGCCGCATCCCCTCA
GTGCCGACGTTCTACGTCGTGGCGCTCACCGGCATCAGCGTCGGCGGGGCGCCGCTCGCCATCCCGCCGTCGGCGTTCTC
GAGCGGCATGGTCATCGACTTCGGCACGGTCATCACGGGGCTTCTGGCGACGGCCTACGCGGCGGTCACAGCAGCGTCGG
ACGTGGCGGCGATGCGCGTGGTGGCGAAGGTGCTCCGTGCACACAAGGCGCTCGGGTGGAGCACTGGCGACCCTTGCTCT
CCGTCCAAGGCCTGGCGTCCCTGCTCCCGCCGCCGCCCTGCCGTGGCCGAGCCGTCCCGGCTCGGGCCGGCCGCCGTCGC
GCCTCTGCTCTGCTGCGAGGAAAGAAGAAAGGGAAAAAATAGAGAAAGGAAGAACGGTGTCCAGGGGTATTTTGATACTT
ACACAACTCTTTCTCTCTCTATCTCGACCGGAAATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27726.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis