Browse Element(s) Details


OsAffx.27729.1.S1_at

Description tigr:9634.m01968
TID=OsAffx.27729.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2027011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20219Os.55476.1.S1_at1/116+11607603..11608204NA
LOC_Os06g20230Os.40360.1.S1_at9/116+11611768..11613493hypothetical protein
LOC_Os06g20230Os.40360.1.S1_x_at8/116+11611768..11613493hypothetical protein
LOC_Os06g20230Os.40855.2.S1_x_at3/116+11611768..11613493hypothetical protein
LOC_Os06g20230Os.40855.5.S1_x_at1/116+11611768..11613493hypothetical protein
LOC_Os06g20240NANA6+11617544..11618253hypothetical protein
LOC_Os06g20250OsAffx.24317.5.S1_x_at2/116+11619379..11620166retrotransposon, putative, centromere-specific
LOC_Os06g20260OsAffx.27728.1.S1_at11/116+11623801..11626173expressed protein
LOC_Os06g20270OsAffx.27729.1.S1_at11/116+11629062..11630288expressed protein
LOC_Os06g20280OsAffx.15513.1.S1_at11/116+11636291..11642315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20280OsAffx.15513.1.S1_x_at10/116+11636291..11642315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20280OsAffx.8319.1.S1_x_at3/116+11636291..11642315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20280OsAffx.8319.1.S1_at1/116+11636291..11642315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20290OsAffx.27730.1.S1_at11/116+11652823..11653706hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27729.1.S1_at--271--411Chr06:11630234..11630258 (25 bp)
ATCATCTGCATCGAGCGTCAATCGC
LOC_Os06g20270
OsAffx.27729.1.S1_at--53--4652Chr06:11627376..11627399 (24 bp)
GCGTCAATCGCTGCAATTTTCTACA
NONE
OsAffx.27729.1.S1_at--1094--10291Chr06:11630203..11630227 (25 bp)
TTTCTACAGTTACTGCAGGCAAAGA
LOC_Os06g20270
OsAffx.27729.1.S1_at--680--1292Chr06:11630181..11630205 (25 bp)
AGATGACAGTCCTGCTCTCAACTCT
LOC_Os06g20270
OsAffx.27729.1.S1_at--936--2531Chr06:11630162..11630186 (25 bp)
AACTCTACGGCAAAGACGTATCTTA
LOC_Os06g20270
OsAffx.27729.1.S1_at--372--2492Chr06:11628172..11628196 (25 bp)
AACAGATCTCCGTTGACCCCGCTGA
NONE
OsAffx.27729.1.S1_at--946--4191Chr06:11629416..11629440 (25 bp)
CCCGCTGACTACATCGCAAAGCGAA
LOC_Os06g20270
OsAffx.27729.1.S1_at--692--9931Chr06:11629391..11629415 (25 bp)
TACGTGGACTGGATGGTAGACCCAT
LOC_Os06g20270
OsAffx.27729.1.S1_at--662--7851Chr06:11629377..11629401 (25 bp)
GGTAGACCCATCGTAGCAAACAAAG
LOC_Os06g20270
OsAffx.27729.1.S1_at--483--8131Chr06:11629267..11629291 (25 bp)
GGACATGCAATTTTTGGATCGTAAG
LOC_Os06g20270
OsAffx.27729.1.S1_at--707--8551Chr06:11629196..11629220 (25 bp)
TGGAGTGTCTCACCAAAGCATATTG
LOC_Os06g20270
Target Sequence 
ATCATCTGCATCGAGCGTCAATCGCTGCAATTTTCTACAGTTACTGCAGGCAAAGATGACAGTCCTGCTCTCAACTCTAC
GGCAAAGACGTATCTTAAGGATTTAACTGACAGTGTTTCACGATATCCACGCAAGAAACAGATCTCCGTTGACCCCGCTG
ACTACATCGCAAAGCGAATACGTGGACTGGATGGTAGACCCATCGTAGCAAACAAAGAGTTTGATTATGATAGAAGGACA
TTTGTAGAAAATAAGAAAGATTATGATTTCGGGGCAACATTTCAAGAGCAATTTAGTGTAGTGGACATGCAATTTTTGGA
TCGTAAGAACACCATCGTGCACATTGACGATGTTGTGCTTACAGGAGCAAATTTGGAGTGTCTCACCAAAGCATATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis