Browse Element(s) Details


OsAffx.27768.1.S1_s_at

Description tigr:9634.m02198
TID=OsAffx.27768.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2242011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22400OsAffx.4901.1.S1_at10/116+13018642..13020761hypothetical protein
LOC_Os06g22410NANA6+13028815..13029183hypothetical protein
LOC_Os06g22420OsAffx.27768.1.S1_s_at11/116+13030175..13031067expressed protein
LOC_Os06g22430Os.46306.1.S1_x_at6/116+13033642..13039977transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g22440Os.52682.1.S1_at11/116+13040901..13043159SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os06g22450OsAffx.15555.1.S1_at11/116+13051783..13052172hypothetical protein
LOC_Os06g22460OsAffx.27769.1.S1_at11/116+13054163..13057028NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27768.1.S1_s_at--706--9271Chr06:13030751..13030775 (25 bp)
TCTACTACCAGGTGACAGTCCCAAA
LOC_Os06g22420
OsAffx.27768.1.S1_s_at--117--7771Chr06:13030741..13030765 (25 bp)
GGTGACAGTCCCAAATTATCCCAAT
LOC_Os06g22420
OsAffx.27768.1.S1_s_at--138--10531Chr06:13030643..13030667 (25 bp)
TTCAGCACCCAGCATCAGTCAATGC
LOC_Os06g22420
OsAffx.27768.1.S1_s_at--624--3411Chr06:13030628..13030652 (25 bp)
CAGTCAATGCCAGTAGCGCTGTTTT
LOC_Os06g22420
OsAffx.27768.1.S1_s_at--149--4431Chr06:13030620..13030644 (25 bp)
GCCAGTAGCGCTGTTTTTGTTCCAG
LOC_Os06g22420
OsAffx.27768.1.S1_s_at--241--7711Chr06:13030558..13030582 (25 bp)
GGGTCCTAGATCTACTGCTGGTAGC
LOC_Os06g22420
OsAffx.27768.1.S1_s_at--899--3711Chr06:13030547..13030571 (25 bp)
CTACTGCTGGTAGCACGAATCGGCA
LOC_Os06g22420
OsAffx.27768.1.S1_s_at--986--5411Chr06:13030515..13030539 (25 bp)
GAAGCCCTTTTTGCTGGGTCTGGAG
LOC_Os06g22420
OsAffx.27768.1.S1_s_at--979--4991Chr06:13030428..13030452 (25 bp)
GCATGGTTGGATCTGCCATTGGATT
LOC_Os06g22420
OsAffx.27768.1.S1_s_at--920--1191Chr06:13030263..13030287 (25 bp)
AGTATCAATCATCTGTATCTCTGTG
LOC_Os06g22420
OsAffx.27768.1.S1_s_at--830--3871Chr06:13030243..13030267 (25 bp)
CTGTGCTCGATCTGAAAGGGAAAAA
LOC_Os06g22420
Target Sequence 
TCTACTACCAGGTGACAGTCCCAAATTATCCCAATAACCCTAACTCTTCTGAGATAGGAGTAGTTTGGGCGTCAGATATA
CTGAAGAAATGCGTAGATCTTGGCTATCTTCAGCACCCAGCATCAGTCAATGCCAGTAGCGCTGTTTTTGTTCCAGCTGC
TACACCAACAGCGCTTGATCTGACACTTAGGTTGGGTCCTAGATCTACTGCTGGTAGCACGAATCGGCAGATCGTAGAAG
CCCTTTTTGCTGGGTCTGGAGGTTCAGCGTGACTGCTGCGAAGATCGGCGATGAGCGCAAATGAATGGAGGAGTTAATTA
AATGCATGGTTGGATCTGCCATTGGATTAGTTGGAGGCTGAGATAAGAGATTCAGAACTGATAATTTAGGTTCTGATGAG
CTGAGTGCGTGCGTCTATGTTTTTTTTTCCCCATTAGTTATTTGTTAGCAACGTTTCTAGTTCAGTTTTGAATGTGGTAA
AAGTTCGAAGTATCAATCATCTGTATCTCTGTGCTCGATCTGAAAGGGAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27768.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis