CREP Browser

Description

tigr:9634.m02196
TID=OsAffx.4901.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g22400	10/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g22380	Os.9581.1.S1_a_at	11/11	6	+	12990293..12999795	expressed protein
LOC_Os06g22380	Os.50783.1.S1_x_at	4/11	6	+	12990293..12999795	expressed protein
LOC_Os06g22390	Os.52552.1.S1_at	11/11	6	+	13002029..13002794	expressed protein
LOC_Os06g22400	OsAffx.4901.1.S1_at	10/11	6	+	13018642..13020761	hypothetical protein
LOC_Os06g22410	NA	NA	6	+	13028815..13029183	hypothetical protein
LOC_Os06g22420	OsAffx.27768.1.S1_s_at	11/11	6	+	13030175..13031067	expressed protein
LOC_Os06g22430	Os.46306.1.S1_x_at	6/11	6	+	13033642..13039977	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g22440	Os.52682.1.S1_at	11/11	6	+	13040901..13043159	SAM dependent carboxyl methyltransferase family protein, expressed

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.4901.1.S1_at--1035--929	1	NONE	TCCCGAACGCCGATCAATCGAATAA	NONE
OsAffx.4901.1.S1_at--289--405	1	Chr06:13018720..13018743 (24 bp)	CGATCAATCGAATAATGGCCAGCTT	LOC_Os06g22400
OsAffx.4901.1.S1_at--193--319	1	Chr06:13018716..13018740 (25 bp)	CAATCGAATAATGGCCAGCTTCACC	LOC_Os06g22400
OsAffx.4901.1.S1_at--868--523	1	Chr06:13018711..13018735 (25 bp)	GAATAATGGCCAGCTTCACCATGTT	LOC_Os06g22400
OsAffx.4901.1.S1_at--445--977	1	Chr06:13018708..13018732 (25 bp)	TAATGGCCAGCTTCACCATGTTCTT	LOC_Os06g22400
OsAffx.4901.1.S1_at--774--673	1	Chr06:13018689..13018713 (25 bp)	GTTCTTCATTCACTTACTGGACTTC	LOC_Os06g22400
OsAffx.4901.1.S1_at--522--365	1	Chr06:13018686..13018710 (25 bp)	CTTCATTCACTTACTGGACTTCTTC	LOC_Os06g22400
OsAffx.4901.1.S1_at--624--13	1	Chr06:13018682..13018706 (25 bp)	ATTCACTTACTGGACTTCTTCAGCC	LOC_Os06g22400
OsAffx.4901.1.S1_at--37--333	1	Chr06:13018679..13018703 (25 bp)	CACTTACTGGACTTCTTCAGCCTGA	LOC_Os06g22400
OsAffx.4901.1.S1_at--624--1047	1	Chr06:13018676..13018700 (25 bp)	TTACTGGACTTCTTCAGCCTGACTT	LOC_Os06g22400
OsAffx.4901.1.S1_at--602--853	1	Chr06:13018672..13018696 (25 bp)	TGGACTTCTTCAGCCTGACTTTGAT	LOC_Os06g22400

Target Sequence

TCCCGAACGCCGATCAATCGAATAATGGCCAGCTTCACCATGTTCTTCATTCACTTACTGGACTTCTTCAGCCTGACTTT
GAT

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Browse Element(s) Details