Browse Element(s) Details


Os.52552.1.S1_at

Description gb:AK067924.1
DB_XREF= gi:32977942
TID=Os.52552.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52552 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013122H17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122H17, full insert sequence.
FL= gb:AK067924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2239011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22350OsAffx.4900.1.S1_at11/116+12972930..12977457expressed protein
LOC_Os06g22350OsAffx.13875.1.S1_at1/116+12972930..12977457expressed protein
LOC_Os06g22360OsAffx.27767.1.S1_at11/116+12982167..12982889hypothetical protein
LOC_Os06g22370OsAffx.15553.1.S1_at11/116+12987185..12989509hypothetical protein
LOC_Os06g22380Os.9581.1.S1_a_at11/116+12990293..12999795expressed protein
LOC_Os06g22380Os.50783.1.S1_x_at4/116+12990293..12999795expressed protein
LOC_Os06g22390Os.52552.1.S1_at11/116+13002029..13002794expressed protein
LOC_Os06g22400OsAffx.4901.1.S1_at10/116+13018642..13020761hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52552.1.S1_at--1091--1551Chr06:13002558..13002582 (25 bp)
AGCTTTGCAATCATCGGTCGGTCGA
LOC_Os06g22390
Os.52552.1.S1_at--98--7811Chr06:13002573..13002597 (25 bp)
GGTCGGTCGATCTACACAGGTTAAT
LOC_Os06g22390
Os.52552.1.S1_at--986--3291Chr06:13002587..13002611 (25 bp)
CACAGGTTAATTTCGCCATAGCTTT
LOC_Os06g22390
Os.52552.1.S1_at--771--291Chr06:13002604..13002628 (25 bp)
ATAGCTTTCGAATCTCCACGTACGC
LOC_Os06g22390
Os.52552.1.S1_at--463--1891Chr06:13002621..13002645 (25 bp)
ACGTACGCTGCTCTGTTTATCTGCT
LOC_Os06g22390
Os.52552.1.S1_at--1055--10411Chr06:13002637..13002661 (25 bp)
TTATCTGCTTCGAGGATATGCCTGA
LOC_Os06g22390
Os.52552.1.S1_at--43--7951Chr06:13002650..13002674 (25 bp)
GGATATGCCTGAAAATTCATCGGTA
LOC_Os06g22390
Os.52552.1.S1_at--459--2591Chr06:13002681..13002704 (24 bp)
AACGAACATCCGAACATGGCCTGTC
LOC_Os06g22390
Os.52552.1.S1_at--1020--871Chr06:13002695..13002719 (25 bp)
ATGGCCTGTCTGTACGTGTATGTTA
LOC_Os06g22390
Os.52552.1.S1_at--622--5331Chr06:13002746..13002770 (25 bp)
GAAGTTCAGAGCTTGTAATGGGTGC
LOC_Os06g22390
Os.52552.1.S1_at--883--2971Chr06:13002762..13002786 (25 bp)
AATGGGTGCTGGTTGTGTACATGTA
LOC_Os06g22390
Target Sequence 
AGCTTTGCAATCATCGGTCGGTCGATCTACACAGGTTAATTTCGCCATAGCTTTCGAATCTCCACGTACGCTGCTCTGTT
TATCTGCTTCGAGGATATGCCTGAAAATTCATCGGTAGAAACAACGAACATCCGAACATGGCCTGTCTGTACGTGTATGT
TAGTACAGGTAATTAATTAATGTAATAAGAAGTTCAGAGCTTGTAATGGGTGCTGGTTGTGTACATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis