Browse Element(s) Details


Os.50783.1.S1_x_at

Description gb:AK058542.1
DB_XREF= gi:32968560
TID=Os.50783.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-B09, full insert sequence.
FL= gb:AK058542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g223804/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22330Os.52267.1.S1_at11/116+12961886..12965474expressed protein
LOC_Os06g22340Os.49566.1.S1_at11/116+12966331..12968078Cytochrome P450 89A2, putative, expressed
LOC_Os06g22350OsAffx.4900.1.S1_at11/116+12972930..12977457expressed protein
LOC_Os06g22350OsAffx.13875.1.S1_at1/116+12972930..12977457expressed protein
LOC_Os06g22360OsAffx.27767.1.S1_at11/116+12982167..12982889hypothetical protein
LOC_Os06g22370OsAffx.15553.1.S1_at11/116+12987185..12989509hypothetical protein
LOC_Os06g22380Os.9581.1.S1_a_at11/116+12990293..12999795expressed protein
LOC_Os06g22380Os.50783.1.S1_x_at4/116+12990293..12999795expressed protein
LOC_Os06g22390Os.52552.1.S1_at11/116+13002029..13002794expressed protein
LOC_Os06g22400OsAffx.4901.1.S1_at10/116+13018642..13020761hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50783.1.S1_x_at--728--2511Chr06:12990779..12990803 (25 bp)
AACTAGTGCATACAGCGCGCAATCA
LOC_Os06g22380
Os.50783.1.S1_x_at--101--1571Chr06:12990742..12990766 (25 bp)
AGCTATGTTCTACCCATATCTACAC
LOC_Os06g22380
Os.50783.1.S1_x_at--366--8411Chr06:12990424..12990448 (25 bp)
GGCCCCACCTGCTAAGAAATTGTTC
LOC_Os06g22380
Os.50783.1.S1_x_at--459--8791Chr06:12990404..12990428 (25 bp)
TGTTCAAGGATGATAGCCCCAGCAA
LOC_Os06g22380
Os.50783.1.S1_x_at--840--1191Chr06:12990257..12990281 (25 bp)
AGTATGCTGCTACTTTTGTTTCCCC
NONE
Os.50783.1.S1_x_at--739--251Chr06:12990227..12990251 (25 bp)
ATATCGTTTGCACCAGCGGATGTAC
NONE
Os.50783.1.S1_x_at--74--9071Chr06:12990197..12990221 (25 bp)
TGCTAGCCAGGCCTTTTGTTCAAGA
NONE
Os.50783.1.S1_x_at--303--1391Chr06:12990175..12990199 (25 bp)
AGACCTCTTCCTTATCAATTTGCAT
NONE
Os.50783.1.S1_x_at--884--10051Chr06:12990147..12990171 (25 bp)
TAGTCTTTGTTTCCTGCAGTCGTTT
NONE
Os.50783.1.S1_x_at--352--5031Chr06:12990132..12990156 (25 bp)
GCAGTCGTTTTTCTGTTCGTCTATA
NONE
Os.50783.1.S1_x_at--683--7071Chr06:12990054..12990078 (25 bp)
GTAATATGCAATGTTCCCCTACCAC
NONE
Target Sequence 
AACTAGTGCATACAGCGCGCAATCAACAAGCAAAAAGAGCTATGTTCTACCCATATCTACACCCATTCAGGCAAAACCTG
TGCCAGATGTTACAGGGGTAGCTGCACAGCCTCCACCATCTGTCAACCTGTCCACCAAAAAAATCACCGAAAAAAGGGCC
ATGCCTACAGCCTCGGCCCCACCTGCTAAGAAATTGTTCAAGGATGATAGCCCCAGCAAGGGCGACAACAAGTGAATCAA
AGAAAAAGTATGCTGCTACTTTTGTTTCCCCCTACAATATCGTTTGCACCAGCGGATGTACTCCTCTGCTAGCCAGGCCT
TTTGTTCAAGACCTCTTCCTTATCAATTTGCATAAGTAGTCTTTGTTTCCTGCAGTCGTTTTTCTGTTCGTCTATATCTA
TCTTTGGACCTTGAAAATCCACTGTTACTCCAGAACATGGCACTCTTGTGTAATATGCAATGTTCCCCTACCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50783.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis