Browse Element(s) Details

Os.9581.1.S1_a_at

Description

gb:CR289400
DB_XREF= gi:44675966
DB_XREF=CR289400
CLONE=p751b07p3
TID=Os.9581.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9581 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g22380	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g22330	Os.52267.1.S1_at	11/11	6	+	12961886..12965474	expressed protein
LOC_Os06g22340	Os.49566.1.S1_at	11/11	6	+	12966331..12968078	Cytochrome P450 89A2, putative, expressed
LOC_Os06g22350	OsAffx.4900.1.S1_at	11/11	6	+	12972930..12977457	expressed protein
LOC_Os06g22350	OsAffx.13875.1.S1_at	1/11	6	+	12972930..12977457	expressed protein
LOC_Os06g22360	OsAffx.27767.1.S1_at	11/11	6	+	12982167..12982889	hypothetical protein
LOC_Os06g22370	OsAffx.15553.1.S1_at	11/11	6	+	12987185..12989509	hypothetical protein
LOC_Os06g22380	Os.9581.1.S1_a_at	11/11	6	+	12990293..12999795	expressed protein
LOC_Os06g22380	Os.50783.1.S1_x_at	4/11	6	+	12990293..12999795	expressed protein
LOC_Os06g22390	Os.52552.1.S1_at	11/11	6	+	13002029..13002794	expressed protein
LOC_Os06g22400	OsAffx.4901.1.S1_at	10/11	6	+	13018642..13020761	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.9581.1.S1_a_at--952--87	1	Chr06:12998880..12998904 (25 bp)	AGGCGCTATGTTTACTGTGAACACG	LOC_Os06g22380
Os.9581.1.S1_a_at--1102--1009	1	Chr06:12998874..12998898 (25 bp)	TATGTTTACTGTGAACACGTCGCAC	LOC_Os06g22380
Os.9581.1.S1_a_at--1036--991	1	Chr06:12998868..12998892 (25 bp)	TACTGTGAACACGTCGCACATCCTG	LOC_Os06g22380
Os.9581.1.S1_a_at--173--901	1	Chr06:12998839..12998863 (25 bp)	TGAATGTAGCCACGGAACGCTGCAT	LOC_Os06g22380
Os.9581.1.S1_a_at--655--75	1	Chr06:12998836..12998860 (25 bp)	ATGTAGCCACGGAACGCTGCATGCT	LOC_Os06g22380
Os.9581.1.S1_a_at--385--665	1	Chr06:12998769..12998793 (25 bp)	GTTGTTGGCTGGAATTGAGCTTGTC	LOC_Os06g22380
Os.9581.1.S1_a_at--72--835	1	Chr06:12998763..12998787 (25 bp)	GGCTGGAATTGAGCTTGTCTTCCCA	LOC_Os06g22380
Os.9581.1.S1_a_at--389--317	1	Chr06:12998757..12998781 (25 bp)	AATTGAGCTTGTCTTCCCAGCATAT	LOC_Os06g22380
Os.9581.1.S1_a_at--517--155	1	Chr06:12998752..12998776 (25 bp)	AGCTTGTCTTCCCAGCATATGCAGC	LOC_Os06g22380
Os.9581.1.S1_a_at--658--23	1	Chr06:12998736..12998760 (25 bp)	ATATGCAGCCCCAGCTTAGTTAGAC	LOC_Os06g22380
Os.9581.1.S1_a_at--388--453	1	Chr06:12998729..12998753 (25 bp)	GCCCCAGCTTAGTTAGACACCGTTT	LOC_Os06g22380

Target Sequence

AGGCGCTATGTTTACTGTGAACACGTCGCACATCCTGCTTTTGAATGTAGCCACGGAACGCTGCATGCTTCCACCGCCCT
ATTATCTATGGGAGTTTGACTCCGGCGATAGGTTGTTGGCTGGAATTGAGCTTGTCTTCCCAGCATATGCAGCCCCAGCT
TAGTTAGACACCGTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis