Browse Element(s) Details

OsAffx.27767.1.S1_at

Description

tigr:9634.m02192
TID=OsAffx.27767.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g22360	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g22320	OsAffx.13097.1.S1_s_at	5/11	6	+	12955392..12960183	Zinc knuckle family protein
LOC_Os06g22320	OsAffx.15500.1.S1_x_at	1/11	6	+	12955392..12960183	Zinc knuckle family protein
LOC_Os06g22330	Os.52267.1.S1_at	11/11	6	+	12961886..12965474	expressed protein
LOC_Os06g22340	Os.49566.1.S1_at	11/11	6	+	12966331..12968078	Cytochrome P450 89A2, putative, expressed
LOC_Os06g22350	OsAffx.4900.1.S1_at	11/11	6	+	12972930..12977457	expressed protein
LOC_Os06g22350	OsAffx.13875.1.S1_at	1/11	6	+	12972930..12977457	expressed protein
LOC_Os06g22360	OsAffx.27767.1.S1_at	11/11	6	+	12982167..12982889	hypothetical protein
LOC_Os06g22370	OsAffx.15553.1.S1_at	11/11	6	+	12987185..12989509	hypothetical protein
LOC_Os06g22380	Os.9581.1.S1_a_at	11/11	6	+	12990293..12999795	expressed protein
LOC_Os06g22380	Os.50783.1.S1_x_at	4/11	6	+	12990293..12999795	expressed protein
LOC_Os06g22390	Os.52552.1.S1_at	11/11	6	+	13002029..13002794	expressed protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27767.1.S1_at--629--125	1	Chr06:12982201..12982225 (25 bp)	AGATACGGTCGTTATCGCTGGACGT	LOC_Os06g22360
OsAffx.27767.1.S1_at--767--53	1	Chr06:12982214..12982238 (25 bp)	ATCGCTGGACGTGCTTGCCGATGAC	LOC_Os06g22360
OsAffx.27767.1.S1_at--130--211	1	Chr06:12982277..12982301 (25 bp)	ACATGGACGTCTCGCTACCGTAGGA	LOC_Os06g22360
OsAffx.27767.1.S1_at--923--715	1	Chr06:12982285..12982309 (25 bp)	GTCTCGCTACCGTAGGATTTGGAGG	LOC_Os06g22360
OsAffx.27767.1.S1_at--1098--943	1	Chr06:12982302..12982764 (25 bp)	TTTGGAGGACTTCACGAAAAGTCAA	LOC_Os06g22360
OsAffx.27767.1.S1_at--1064--277	2	Chr06:12982763..12982787 (25 bp)	AAGAGAAGCCCAACTGCCCAAGTGC	LOC_Os06g22360
OsAffx.27767.1.S1_at--706--455	1	Chr06:12982778..12982802 (25 bp)	GCCCAAGTGCCTAGTTAATCCGTTA	LOC_Os06g22360
OsAffx.27767.1.S1_at--560--631	1	Chr06:12982784..12982808 (25 bp)	GTGCCTAGTTAATCCGTTAATCGTA	LOC_Os06g22360
OsAffx.27767.1.S1_at--1137--43	1	Chr06:12982795..12982819 (25 bp)	ATCCGTTAATCGTACAAGATACTGG	LOC_Os06g22360
OsAffx.27767.1.S1_at--47--643	1	Chr06:12982812..12982836 (25 bp)	GATACTGGAGGGTGGAGATTTTTCT	LOC_Os06g22360
OsAffx.27767.1.S1_at--508--1057	1	Chr06:12982833..12982857 (25 bp)	TTCTTTGTGGATCACCATATCTCAA	LOC_Os06g22360

Target Sequence

AGATACGGTCGTTATCGCTGGACGTGCTTGCCGATGACGCCGGAGGCAGAGGGAGAGCAGCGCCGGAGGGAGGGCGACAT
GGACGTCTCGCTACCGTAGGATTTGGAGGACTTCACGAAAAGTCAAGAGAAGCCCAACTGCCCAAGTGCCTAGTTAATCC
GTTAATCGTACAAGATACTGGAGGGTGGAGATTTTTCTTTGTGGATCACCATATCTCAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis