Browse Element(s) Details


Os.49566.1.S1_at

Description gb:AK110659.1
DB_XREF= gi:32995868
TID=Os.49566.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-E12, full insert sequence.
FL= gb:AK110659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2234011/11Cytochrome P450 89A2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22300OsAffx.29789.1.S1_x_at7/116+12944070..12951194hAT family dimerisation domain containing protein
LOC_Os06g22300OsAffx.29789.3.S1_x_at3/116+12944070..12951194hAT family dimerisation domain containing protein
LOC_Os06g22300OsAffx.31885.2.S1_x_at2/116+12944070..12951194hAT family dimerisation domain containing protein
LOC_Os06g22310NANA6+12951373..12952942hypothetical protein
LOC_Os06g22320OsAffx.13097.1.S1_s_at5/116+12955392..12960183Zinc knuckle family protein
LOC_Os06g22320OsAffx.15500.1.S1_x_at1/116+12955392..12960183Zinc knuckle family protein
LOC_Os06g22330Os.52267.1.S1_at11/116+12961886..12965474expressed protein
LOC_Os06g22340Os.49566.1.S1_at11/116+12966331..12968078Cytochrome P450 89A2, putative, expressed
LOC_Os06g22350OsAffx.4900.1.S1_at11/116+12972930..12977457expressed protein
LOC_Os06g22350OsAffx.13875.1.S1_at1/116+12972930..12977457expressed protein
LOC_Os06g22360OsAffx.27767.1.S1_at11/116+12982167..12982889hypothetical protein
LOC_Os06g22370OsAffx.15553.1.S1_at11/116+12987185..12989509hypothetical protein
LOC_Os06g22380Os.9581.1.S1_a_at11/116+12990293..12999795expressed protein
LOC_Os06g22380Os.50783.1.S1_x_at4/116+12990293..12999795expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49566.1.S1_at--778--2151Chr06:12966850..12966874 (25 bp)
ACAGCGAGGTCTGGACCTCGCCGGA
LOC_Os06g22340
Os.49566.1.S1_at--970--4491Chr06:12966530..12966554 (25 bp)
GCCGTCACGGGTTCAGCTTGATCGA
LOC_Os06g22340
Os.49566.1.S1_at--1146--7091Chr06:12966527..12966551 (25 bp)
GTCACGGGTTCAGCTTGATCGAGCT
LOC_Os06g22340
Os.49566.1.S1_at--1072--1531Chr06:12966516..12966540 (25 bp)
AGCTTGATCGAGCTAGGACCTCAAC
LOC_Os06g22340
Os.49566.1.S1_at--706--8851Chr06:12966512..12966536 (25 bp)
TGATCGAGCTAGGACCTCAACGACG
LOC_Os06g22340
Os.49566.1.S1_at--454--1931Chr06:12966478..12966502 (25 bp)
ACGGCGGCCGAATGGTCATGGCTTC
LOC_Os06g22340
Os.49566.1.S1_at--45--4711Chr06:12966475..12966499 (25 bp)
GCGGCCGAATGGTCATGGCTTCTCT
LOC_Os06g22340
Os.49566.1.S1_at--448--8491Chr06:12966460..12966484 (25 bp)
TGGCTTCTCTTGCTCATGCTAATAA
LOC_Os06g22340
Os.49566.1.S1_at--771--3751Chr06:12966454..12966478 (25 bp)
CTCTTGCTCATGCTAATAAGTAGTT
LOC_Os06g22340
Os.49566.1.S1_at--284--1211Chr06:12966433..12966457 (25 bp)
AGTTAGCTATTGTATAATGGTGATT
LOC_Os06g22340
Os.49566.1.S1_at--692--6551Chr06:12966412..12966436 (25 bp)
GATTAGATTAAGTTCCTCTGGTTCT
LOC_Os06g22340
Target Sequence 
ACAGCGAGGTCTGGACCTCGCCGGAGGTGTTCCGGCCCGAGCGGTTCCTCGCCGGCGGCGAGGGCGAGGACGTGGACCTC
ACCGGCAGCAAGGAGATCAAGATGATGCCGTTCGGCGCCGGCCGGAGGATCTGCCCCGGCATGGCGCTGGCGCTGCTCCA
CCTCGAGTACTTCGTCGCCAACCTCGTCAGGGAGTTCGAGTGGCGCGAGGTCGCCGGCGACGAGGTCGACCTCACCCAGA
AGCTCCAGTTCACCGTCGTCATGAAGCNNNNNNNCAAGGCCACCGCCGTGCCGCTGCGCGGCGACCGATCAGCCGCCGCC
GCCGTCACGGGTTCAGCTTGATCGAGCTAGGACCTCAACGACGACGATGGCGACGGCGGCCGAATGGTCATGGCTTCTCT
TGCTCATGCTAATAAGTAGTTAGCTATTGTATAATGGTGATTAGATTAAGTTCCTCTGGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis