Browse Element(s) Details


OsAffx.27769.1.S1_at

Description tigr:9634.m02202
TID=OsAffx.27769.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2246011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22410NANA6+13028815..13029183hypothetical protein
LOC_Os06g22420OsAffx.27768.1.S1_s_at11/116+13030175..13031067expressed protein
LOC_Os06g22430Os.46306.1.S1_x_at6/116+13033642..13039977transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g22440Os.52682.1.S1_at11/116+13040901..13043159SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os06g22450OsAffx.15555.1.S1_at11/116+13051783..13052172hypothetical protein
LOC_Os06g22460OsAffx.27769.1.S1_at11/116+13054163..13057028NB-ARC domain containing protein, expressed
LOC_Os06g22470OsAffx.27770.1.S1_x_at8/116+13060316..13061207hypothetical protein
LOC_Os06g22470Os.51841.1.S1_x_at1/116+13060316..13061207hypothetical protein
LOC_Os06g22480OsAffx.29300.1.S1_at1/116+13063019..13066085retrotransposon protein, putative, unclassified
LOC_Os06g22480OsAffx.28682.2.S1_x_at1/116+13063019..13066085retrotransposon protein, putative, unclassified
LOC_Os06g22480OsAffx.28682.2.S1_at1/116+13063019..13066085retrotransposon protein, putative, unclassified
LOC_Os06g22490OsAffx.4902.1.S1_at11/116+13069022..13069936Sterol desaturase family protein
LOC_Os06g22500OsAffx.27771.2.S1_s_at11/116+13073538..13074388hypothetical protein
LOC_Os06g22500OsAffx.27771.1.S1_x_at7/116+13073538..13074388hypothetical protein
LOC_Os06g22510NANA6+13078439..13081872transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27769.1.S1_at--321--1811Chr06:13054961..13054985 (25 bp)
ACCCTTCAGACATTACTACTCATGG
LOC_Os06g22460
OsAffx.27769.1.S1_at--964--2291Chr06:13054924..13054948 (25 bp)
AAATGGTTCATCACCTAGGCTCTCT
LOC_Os06g22460
OsAffx.27769.1.S1_at--334--3371Chr06:13054913..13054937 (25 bp)
CACCTAGGCTCTCTTGTGGAGTTAA
LOC_Os06g22460
OsAffx.27769.1.S1_at--327--6771Chr06:13054893..13054917 (25 bp)
GTTAAGAACCTTTCGTATCAGCAAG
LOC_Os06g22460
OsAffx.27769.1.S1_at--338--3071Chr06:13054702..13054726 (25 bp)
AATCATTACCTCATTTCGTGTCTGT
LOC_Os06g22460
OsAffx.27769.1.S1_at--595--5171Chr06:13054675..13054699 (25 bp)
GCAATCTGAATAACCTCACGTTTCT
LOC_Os06g22460
OsAffx.27769.1.S1_at--683--1891Chr06:13054658..13054682 (25 bp)
ACGTTTCTACGTCTTGCTGGGTCAA
LOC_Os06g22460
OsAffx.27769.1.S1_at--669--8951Chr06:13054435..13054459 (25 bp)
TGAAGTTCCTGCTCTGTCCAAACCT
LOC_Os06g22460
OsAffx.27769.1.S1_at--947--2711Chr06:13054409..13054433 (25 bp)
AAGCAGTTGCCTTGCGGTATTGAAC
LOC_Os06g22460
OsAffx.27769.1.S1_at--1103--8071Chr06:13054368..13054392 (25 bp)
GGAGCTCACTCTGGATCATACAGCA
LOC_Os06g22460
OsAffx.27769.1.S1_at--46--5891Chr06:13054310..13054334 (25 bp)
GAGCGAATGATTTGTGACGTCCAGA
LOC_Os06g22460
Target Sequence 
ACCCTTCAGACATTACTACTCATGGAAGCTAGTTCTCAAATGGTTCATCACCTAGGCTCTCTTGTGGAGTTAAGAACCTT
TCGTATCAGCAAGAAACTTTTCTTGCAAGGTACATTATCTCATGAATCATTACCTCATTTCGTGTCTGTAAGCAATCTGA
ATAACCTCACGTTTCTACGTCTTGCTGGGTCAAGAATTGACGAAAATGCATTCCTTAATCTTGAGGGATTACAGCAGTTG
GTAAAGCTACAGCTTTATGATGCATATGATGGAATGAATATATACTTCCATGAGAACTCATTTCCAAAGCTCAGAATACT
GAAAATATGGGGTGCCCCACACCTGAATGAAATTAAGATGACAAAAGGAGCTGTGGCAAGCCTAACAGATCTGAAGTTCC
TGCTCTGTCCAAACCTGAAGCAGTTGCCTTGCGGTATTGAACATGTGAGGACTCTTGAGGAGCTCACTCTGGATCATACA
GCAGAAGAGCTTGTGGATAGAATCCGACAGAAAAAAGAGCGAATGATTTGTGACGTCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis