Browse Element(s) Details


OsAffx.27782.1.S1_at

Description tigr:9634.m02279
TID=OsAffx.27782.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2315011/11hypothetical protein
LOC_Os12g038991/11transporter, putative, expressed
LOC_Os11g041201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23130OsAffx.15573.1.S1_at5/116+13487228..13489948hypothetical protein
LOC_Os06g23140OsAffx.27781.1.S1_at11/116+13497673..13500215Copper amine oxidase, enzyme domain containing protein
LOC_Os06g23150OsAffx.27782.1.S1_at11/116+13509345..13509756hypothetical protein
LOC_Os06g23160Os.17321.1.S1_at11/116+13513671..13520720Nucleotidyl transferase family protein, expressed
LOC_Os06g23160OsAffx.17544.1.S1_at1/116+13513671..13520720Nucleotidyl transferase family protein, expressed
LOC_Os06g23170OsAffx.23712.1.S1_at2/116+13523541..13531870retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23170OsAffx.242.1.S1_at1/116+13523541..13531870retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27782.1.S1_at--682--1251Chr06:13509702..13509726 (25 bp)
AGATACAAAGAGAAGGAGCCTCCCG
LOC_Os06g23150
OsAffx.27782.1.S1_at--1156--4671Chr06:13509646..13509665 (20 bp)
GCGGAGAACTATTCTCGGGGATTAA
LOC_Os06g23150
OsAffx.27782.1.S1_at--244--1794Chr12:1619030..1619049 (20 bp)
ACCGAATTATGATCAAATTTCCAAT
LOC_Os12g03899
OsAffx.27782.1.S1_at--513--6451Chr06:13509417..13509441 (25 bp)
GATCAAATTTCCAATAGGAACCAAT
LOC_Os06g23150
OsAffx.27782.1.S1_at--223--951Chr06:13509402..13509426 (25 bp)
AGGAACCAATCAAGAACTCCAATCT
LOC_Os06g23150
OsAffx.27782.1.S1_at--497--5471Chr06:13509389..13509413 (25 bp)
GAACTCCAATCTCCAAGGTCCTTTA
LOC_Os06g23150
OsAffx.27782.1.S1_at--500--9211Chr06:13509385..13509409 (25 bp)
TCCAATCTCCAAGGTCCTTTACGTT
LOC_Os06g23150
OsAffx.27782.1.S1_at--20--3031Chr06:13509382..13509406 (25 bp)
AATCTCCAAGGTCCTTTACGTTATG
LOC_Os06g23150
OsAffx.27782.1.S1_at--76--3791Chr06:13509379..13509403 (25 bp)
CTCCAAGGTCCTTTACGTTATGCGA
LOC_Os06g23150
OsAffx.27782.1.S1_at--463--4371Chr06:13509378..13509402 (25 bp)
TCCAAGGTCCTTTACGTTATGCGAC
LOC_Os06g23150
OsAffx.27782.1.S1_at--435--3211Chr06:13509376..13509400 (25 bp)
CAAGGTCCTTTACGTTATGCGACTA
LOC_Os06g23150
Target Sequence 
AGATACAAAGAGAAGGAGCCTCCCGTCAACATCAACGGAGGCAATACTGCCTCAAACTCCAGCGGAGAACTATTCTCGGG
GATTAAAATATACCGAATTATGATCAAATTTCCAATAGGAACCAATCAAGAACTCCAATCTCCAAGGTCCTTTACGTTAT
GCGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis