Browse Element(s) Details


OsAffx.27832.1.S1_at

Description tigr:9634.m02607
TID=OsAffx.27832.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2632011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g26270Os.51757.1.S1_at11/116+15378506..15383234expressed protein
LOC_Os06g26280OsAffx.27830.1.S1_at11/116+15387453..15388457hypothetical protein
LOC_Os06g26290NANA6+15390918..15391313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g26300OsAffx.27831.1.S1_at11/116+15396703..15397092hypothetical protein
LOC_Os06g26300OsAffx.27831.1.S1_x_at11/116+15396703..15397092hypothetical protein
LOC_Os06g26310NANA6+15398161..15398649retrotransposon protein, putative, unclassified
LOC_Os06g26320OsAffx.27832.1.S1_at11/116+15408152..15409670hypothetical protein
LOC_Os06g26330OsAffx.15626.1.S1_at11/116+15412135..15412773hypothetical protein
LOC_Os06g26330Os.37731.1.S1_at1/116+15412135..15412773hypothetical protein
LOC_Os06g26340Os.27337.1.S1_a_at11/116+15413832..15422583Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27832.1.S1_at--414--4311Chr06:15408717..15408741 (25 bp)
CCTTCCCTAGCTGAAGATGTTAAGA
LOC_Os06g26320
OsAffx.27832.1.S1_at--622--3931Chr06:15408669..15408693 (25 bp)
CGGCTAGAAGCATCTCTTGATAGTT
LOC_Os06g26320
OsAffx.27832.1.S1_at--610--5391Chr06:15408663..15408687 (25 bp)
GAAGCATCTCTTGATAGTTTAGTGA
LOC_Os06g26320
OsAffx.27832.1.S1_at--345--7411Chr06:15408565..15408666 (25 bp)
GTGATTGATTTGTACCTTGAGCAAC
LOC_Os06g26320
OsAffx.27832.1.S1_at--8--4871Chr06:15408520..15408544 (25 bp)
GCTAGACAAAGATTGGCCGATCGGC
LOC_Os06g26320
OsAffx.27832.1.S1_at--430--6391Chr06:15408388..15408412 (25 bp)
GATCGGCTTGTAACAAAAGCCCGAA
LOC_Os06g26320
OsAffx.27832.1.S1_at--652--2431Chr06:15408374..15408398 (25 bp)
AAAAGCCCGAAGGATTGATCTCGTG
LOC_Os06g26320
OsAffx.27832.1.S1_at--229--7931Chr06:15408363..15408387 (25 bp)
GGATTGATCTCGTGGCACAACTGGA
LOC_Os06g26320
OsAffx.27832.1.S1_at--520--2251Chr06:15408268..15408292 (25 bp)
AAATCACGACTTAAATCGGCTAACA
LOC_Os06g26320
OsAffx.27832.1.S1_at--1148--9131Chr06:15408236..15408260 (25 bp)
TGCCGATTTAACCAAGTCTGTGAAG
LOC_Os06g26320
OsAffx.27832.1.S1_at--793--7331Chr06:15408217..15408241 (25 bp)
GTGAAGGTTATCCTAGGAACCGACG
LOC_Os06g26320
Target Sequence 
CCTTCCCTAGCTGAAGATGTTAAGAAAAATCTTGAGAGCATATCTCATCGGCTAGAAGCATCTCTTGATAGTTTAGTGAT
TGATTTGTACCTTGAGCAACATCAATTCAATCTAGAGAAAGCTAGACAAAGATTGGCCGATCGGCGAGAGCGGAAGGGCA
TCGAAGCCACAATCGAAGCCAATCGGCAACTCGTGCATGAAGAGAAGTCCAAGCTTGATCAATTGTCTGAAGGTCCGATC
CAGTCCAACATAGATCGGCTTGTAACAAAAGCCCGAAGGATTGATCTCGTGGCACAACTGGAAGAATGCAAAGCTGAATT
GGCCTTGGAAACACAGAAGGTAGCCAATCTTCCAAAAACAATCGAAGAGCAAAAATCACGACTTAAATCGGCTAACAAAA
ATGTTGCCGATTTAACCAAGTCTGTGAAGGTTATCCTAGGAACCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis