Browse Element(s) Details


OsAffx.27847.1.S1_at

Description tigr:9634.m02700
TID=OsAffx.27847.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=non-LTR retroelement reverse transcriptase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2827011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28230NANA6+16038442..16038717hypothetical protein
LOC_Os06g28240OsAffx.26108.1.S1_at10/116+16041149..16042213hypothetical protein
LOC_Os06g28250OsAffx.10805.2.A1_at11/116+16051473..16055777SWIM zinc finger family protein
LOC_Os06g28260OsAffx.15643.1.S1_at10/116+16057400..16059557hypothetical protein
LOC_Os06g28270OsAffx.27847.1.S1_at11/116+16061895..16063707hypothetical protein
LOC_Os06g28270OsAffx.8558.1.S1_at3/116+16061895..16063707hypothetical protein
LOC_Os06g28280OsAffx.18932.1.S1_at1/116+16064961..16066062retrotransposon protein, putative, unclassified
LOC_Os06g28280Os.53142.1.S1_at1/116+16064961..16066062retrotransposon protein, putative, unclassified
LOC_Os06g28290NANA6+16068092..16068775hypothetical protein
LOC_Os06g28300OsAffx.12189.2.S1_at11/116+16069800..16071707Zinc knuckle family protein, expressed
LOC_Os06g28310NANA6+16075347..16084871retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27847.1.S1_at--419--8852Chr11:13064730..13065161 (25 bp)
TGATCTGAGGGATCTCTTCCCTAAT
NONE
OsAffx.27847.1.S1_at--356--6731Chr06:16063597..16063621 (25 bp)
GTTCTACACTCAGGACATGGATAGC
LOC_Os06g28270
OsAffx.27847.1.S1_at--547--7611Chr06:16062144..16062168 (25 bp)
GGGAATCTCAAGCTGCCGTATCAGG
LOC_Os06g28270
OsAffx.27847.1.S1_at--583--4491Chr06:16062130..16062154 (25 bp)
GCCGTATCAGGACTGGATCCTCAGT
LOC_Os06g28270
OsAffx.27847.1.S1_at--248--6371Chr06:16062115..16062139 (25 bp)
GATCCTCAGTTCTTTTCTGGGATGA
LOC_Os06g28270
OsAffx.27847.1.S1_at--243--5393Chr06:16062070..16062094 (25 bp)
GAAGCAATGCTTTTCCATCTTTATA
LOC_Os06g28270
OsAffx.27847.1.S1_at--47--7893Chr11:13066745..13066875 (25 bp)
GGTTGCCTTAGATAAAACTCTCTCT
NONE
OsAffx.27847.1.S1_at--1032--2294Chr11:13066777..13066801 (25 bp)
AAATGGGTTCTACTCCTCTTGAGGA
NONE
OsAffx.27847.1.S1_at--143--6172Chr06:16061990..16062014 (25 bp)
GAGGATTGTTTTTTACTGCCTCTGA
LOC_Os06g28270
OsAffx.27847.1.S1_at--555--4451Chr06:16061973..16061997 (25 bp)
GCCTCTGATCACTCAGGCTTATGGA
LOC_Os06g28270
OsAffx.27847.1.S1_at--313--1333Chr11:13066856..13066880 (25 bp)
AGAGGAATGGTCTTCTCTCTCTTTG
NONE
Target Sequence 
TGATCTGAGGGATCTCTTCCCTAATCCGGAAAACTTGGATTGTTTGGTGGATCAGTTCTACACTCAGGACATGGATAGCC
TTATTAAGGTTATTCCATCAGACAAAGCACCTGGCCCAGATGGGTTTAATGGGTTTTTTCTTAAGAAATGTTGGCAAATC
ATATCACAGGACTTTTACAGGGGAATCTCAAGCTGCCGTATCAGGACTGGATCCTCAGTTCTTTTCTGGGATGACATTTG
GAATGATAAGATAAGAAGCAATGCTTTTCCATCTTTATATATGGTTGCCTTAGATAAAACTCTCTCTGTTAAGCAAATGG
GTTCTACTCCTCTTGAGGATTGTTTTTTACTGCCTCTGATCACTCAGGCTTATGGAGAATTCACTGTTTTAGAAGAGGAA
TGGTCTTCTCTCTCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis