Browse Element(s) Details


OsAffx.27851.1.S1_at

Description tigr:9634.m02726
TID=OsAffx.27851.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2852010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28460OsAffx.10528.1.S1_x_at1/116+16186334..16193212retrotransposon protein, putative, unclassified
LOC_Os06g28460Os.10959.1.S2_at1/116+16186334..16193212retrotransposon protein, putative, unclassified
LOC_Os06g28470OsAffx.27849.1.S1_at10/116+16194181..16194515hypothetical protein
LOC_Os06g28480Os.51853.1.S1_at11/116+16197180..16199062Leucine Rich Repeat family protein, expressed
LOC_Os06g28490OsAffx.27850.1.S1_at11/116+16202640..16203686Zinc knuckle family protein
LOC_Os06g28500NANA6+16204106..16205627retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g28510NANA6+16207405..16210078retrotransposon protein, putative, unclassified, expressed
LOC_Os06g28520OsAffx.27851.1.S1_at10/116+16216265..16218075hypothetical protein
LOC_Os06g28530Os.27088.1.A1_x_at9/116+16234166..16236118retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g28530Os.46012.2.S1_x_at3/116+16234166..16236118retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g28540NANA6+16240812..16242447hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27851.1.S1_at--1142--7771Chr06:16216311..16216335 (25 bp)
GGTCCACCGTGGACTGGCGCACCTG
LOC_Os06g28520
OsAffx.27851.1.S1_at--127--7531Chr06:16216319..16216343 (25 bp)
GTGGACTGGCGCACCTGTGCCACCT
LOC_Os06g28520
OsAffx.27851.1.S1_at--625--4051NONE
CGATGACGTCATCCGAGGGATTGGG
NONE
OsAffx.27851.1.S1_at--782--332Chr06:16217878..16217902 (25 bp)
ATCAAATGGCCGGTATTAGGTTTGC
LOC_Os06g28520
OsAffx.27851.1.S1_at--959--2292Chr06:16217881..16217905 (25 bp)
AAATGGCCGGTATTAGGTTTGCAGG
LOC_Os06g28520
OsAffx.27851.1.S1_at--260--4452Chr06:16217886..16217910 (25 bp)
GCCGGTATTAGGTTTGCAGGCCTCA
LOC_Os06g28520
OsAffx.27851.1.S1_at--469--3971Chr06:16217888..16217912 (25 bp)
CGGTATTAGGTTTGCAGGCCTCAGA
LOC_Os06g28520
OsAffx.27851.1.S1_at--826--151Chr06:16217892..16217916 (25 bp)
ATTAGGTTTGCAGGCCTCAGAGCTA
LOC_Os06g28520
OsAffx.27851.1.S1_at--577--4152Chr06:16217971..16217995 (25 bp)
CGCGATGGCGACATCGATGACGCCG
LOC_Os06g28520
OsAffx.27851.1.S1_at--11--4612Chr06:16217978..16218002 (25 bp)
GCGACATCGATGACGCCGGCGCTCG
LOC_Os06g28520
OsAffx.27851.1.S1_at--813--8652Chr06:16218011..16218035 (25 bp)
TGGGCGGAGCGGCTTCCGCGGCTGG
LOC_Os06g28520
Target Sequence 
GGTCCACCGTGGACTGGCGCACCTGTGCCACCTCCATGTGGGGCCCGCCTATTGGCGCCGCTCTCTCCGATGACGTCATC
CGAGGGATTGGGGGAATCAAATGGCCGGTATTAGGTTTGCAGGCCTCAGAGCTAGGGGTGAAGAAGGGCGAGGTGGCGGC
CGTTATCCCTCGGCGTCGAGAGGCGACGCGCGATGGCGACATCGATGACGCCGGCGCTCGTGGCGGCATGGGCGGAGCGG
CTTCCGCGGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis