Browse Element(s) Details


Os.51853.1.S1_at

Description gb:AK064086.1
DB_XREF= gi:32974104
TID=Os.51853.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-009-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B12, full insert sequence.
FL= gb:AK105019.2 gb:AK064086.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2848011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28430OsAffx.15645.1.S1_at11/116+16176381..16177461hypothetical protein
LOC_Os06g28440NANA6+16177851..16178333retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g28450OsAffx.1196.1.S1_x_at1/116+16178853..16182852retrotransposon protein, putative, unclassified
LOC_Os06g28450OsAffx.1196.1.S1_at1/116+16178853..16182852retrotransposon protein, putative, unclassified
LOC_Os06g28460OsAffx.10528.1.S1_x_at1/116+16186334..16193212retrotransposon protein, putative, unclassified
LOC_Os06g28460Os.10959.1.S2_at1/116+16186334..16193212retrotransposon protein, putative, unclassified
LOC_Os06g28470OsAffx.27849.1.S1_at10/116+16194181..16194515hypothetical protein
LOC_Os06g28480Os.51853.1.S1_at11/116+16197180..16199062Leucine Rich Repeat family protein, expressed
LOC_Os06g28490OsAffx.27850.1.S1_at11/116+16202640..16203686Zinc knuckle family protein
LOC_Os06g28500NANA6+16204106..16205627retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g28510NANA6+16207405..16210078retrotransposon protein, putative, unclassified, expressed
LOC_Os06g28520OsAffx.27851.1.S1_at10/116+16216265..16218075hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51853.1.S1_at--166--3891Chr06:16198517..16198541 (25 bp)
CTGTGCCTCTCTTACAATTGCATGG
LOC_Os06g28480
Os.51853.1.S1_at--425--3171Chr06:16198532..16198556 (25 bp)
AATTGCATGGAGCTACCGTCCGCTT
LOC_Os06g28480
Os.51853.1.S1_at--626--7951Chr06:16198758..16198782 (25 bp)
GGATAGCTAAGCCTGGCTCACACAT
LOC_Os06g28480
Os.51853.1.S1_at--42--4831Chr06:16198773..16198797 (25 bp)
GCTCACACATTTTCGTTTTGTCCGT
LOC_Os06g28480
Os.51853.1.S1_at--339--7871Chr06:16198827..16198851 (25 bp)
GGTTTGAATTCATCGGCATCCGGGC
LOC_Os06g28480
Os.51853.1.S1_at--365--4111Chr06:16198865..16198889 (25 bp)
CGCAACGGTTACACGGCTACAAGGT
LOC_Os06g28480
Os.51853.1.S1_at--732--7471Chr06:16198906..16198930 (25 bp)
GTGTGTGCAATTACTCGCTCTGGTA
LOC_Os06g28480
Os.51853.1.S1_at--566--4811Chr06:16198922..16198946 (25 bp)
GCTCTGGTAGTTTGTACGCTGCGTC
LOC_Os06g28480
Os.51853.1.S1_at--119--7191Chr06:16198944..16198968 (25 bp)
GTCTGTGTTACTCTGTTCATTGTGA
LOC_Os06g28480
Os.51853.1.S1_at--279--6092Chr06:16198967..16198991 (25 bp)
GAGTAGCTGGCAGTGTCCATTTAAA
LOC_Os06g28480
Os.51853.1.S1_at--533--2191Chr06:16198991..16199015 (25 bp)
ACAACTCTGTTCATACTCTACTAAG
LOC_Os06g28480
Target Sequence 
CTGTGCCTCTCTTACAATTGCATGGAGCTACCGTCCGCTTCTGCCGCCAACGGGTGCCCCACCATCGGCGGCCCAATGGA
GTCCAGGCCCGCCGACCAGTGCCGGAGCAGCACCGCAGCCAACGCCGGCAGCAGCGGAGGGGACGGCTGAGCCGCCAACA
TTCCTCAAGGCTGACAGGTGGGGCCCACCTGGTTCAGCTCATCAGCTGGGCACNGGTGGGGGCGTGAGGAAGGGACGGCC
AGGATAGCTAAGCCTGGCTCACACATTTTCGTTTTGTCCGTTTGTTTCGGGTGTGGTTTTCATGTGATTGGGTTTGAATT
CATCGGCATCCGGGCTTGTCGTCGGGCGCGCAACGGTTACACGGCTACAAGGTTAGCGCGTTCTTGTGCGTGTGTGCAAT
TACTCGCTCTGGTAGTTTGTACGCTGCGTCTGTGTTACTCTGTTCATTGTGAGTAGCTGGCAGTGTCCATTTAAACAACT
CTGTTCATACTCTACTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis