Browse Element(s) Details


OsAffx.27849.1.S1_at

Description tigr:9634.m02721
TID=OsAffx.27849.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2847010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28430OsAffx.15645.1.S1_at11/116+16176381..16177461hypothetical protein
LOC_Os06g28440NANA6+16177851..16178333retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g28450OsAffx.1196.1.S1_x_at1/116+16178853..16182852retrotransposon protein, putative, unclassified
LOC_Os06g28450OsAffx.1196.1.S1_at1/116+16178853..16182852retrotransposon protein, putative, unclassified
LOC_Os06g28460OsAffx.10528.1.S1_x_at1/116+16186334..16193212retrotransposon protein, putative, unclassified
LOC_Os06g28460Os.10959.1.S2_at1/116+16186334..16193212retrotransposon protein, putative, unclassified
LOC_Os06g28470OsAffx.27849.1.S1_at10/116+16194181..16194515hypothetical protein
LOC_Os06g28480Os.51853.1.S1_at11/116+16197180..16199062Leucine Rich Repeat family protein, expressed
LOC_Os06g28490OsAffx.27850.1.S1_at11/116+16202640..16203686Zinc knuckle family protein
LOC_Os06g28500NANA6+16204106..16205627retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g28510NANA6+16207405..16210078retrotransposon protein, putative, unclassified, expressed
LOC_Os06g28520OsAffx.27851.1.S1_at10/116+16216265..16218075hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27849.1.S1_at--1003--9571Chr06:16194227..16194251 (25 bp)
TCTTCCTCTGGTGCTTGCTCGTCAT
LOC_Os06g28470
OsAffx.27849.1.S1_at--1127--3771Chr06:16194232..16194256 (25 bp)
CTCTGGTGCTTGCTCGTCATCCAGA
LOC_Os06g28470
OsAffx.27849.1.S1_at--201--9411Chr06:16194245..16194269 (25 bp)
TCGTCATCCAGAACATGAGCCGCTA
LOC_Os06g28470
OsAffx.27849.1.S1_at--934--9611Chr06:16194248..16194272 (25 bp)
TCATCCAGAACATGAGCCGCTACAT
LOC_Os06g28470
OsAffx.27849.1.S1_at--645--5491NONE
GAACATGAGCCGCTACATGCGCGAT
NONE
OsAffx.27849.1.S1_at--549--2111Chr06:16194257..16194277 (21 bp)
ACATGAGCCGCTACATGCGCGATGG
LOC_Os06g28470
OsAffx.27849.1.S1_at--421--7651Chr06:16194331..16194355 (25 bp)
GGGAGGCTGCGTCTAGCGACGAGCA
LOC_Os06g28470
OsAffx.27849.1.S1_at--201--6151Chr06:16194363..16194387 (25 bp)
GAGGTCCCTGTTCTCCATGACGACG
LOC_Os06g28470
OsAffx.27849.1.S1_at--982--7791Chr06:16194365..16194389 (25 bp)
GGTCCCTGTTCTCCATGACGACGCA
LOC_Os06g28470
OsAffx.27849.1.S1_at--783--7771Chr06:16194428..16194452 (25 bp)
GGTGCACGGCGAAGACGCGGGACAC
LOC_Os06g28470
OsAffx.27849.1.S1_at--66--8151Chr06:16194447..16194471 (25 bp)
GGACACGGCGCCATTGACGTCGCCA
LOC_Os06g28470
Target Sequence 
TCTTCCTCTGGTGCTTGCTCGTCATCCAGAACATGAGCCGCTACATGCGCGATGGGGAGGCTGCGTCTAGCGACGAGCAG
GAAGGCGAGGTCCCTGTTCTCCATGACGACGCAGCCGAGGCGGGGGAAGACGGCGTAGTGGAAGGGGCCCGGGTGCACGG
CGAAGACGCGGGACACGGCGCCATTGACGTCGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis