Browse Element(s) Details


OsAffx.27854.1.S1_at

Description tigr:9630.m02853
TID=OsAffx.27854.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g298509/11hypothetical protein
LOC_Os05g209003/11hypothetical protein
LOC_Os10g152793/11hypothetical protein
LOC_Os07g109501/11hypothetical protein
LOC_Os06g261901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29780NANA2+17714553..17719688retrotransposon protein, putative, unclassified
LOC_Os02g29790NANA2+17720528..17721480hypothetical protein
LOC_Os02g29800NANA2+17726255..17726572hypothetical protein
LOC_Os02g29810OsAffx.12281.1.S1_at11/112+17729224..17730320hypothetical protein
LOC_Os02g29820NANA2+17734541..17735537retrotransposon protein, putative, unclassified
LOC_Os02g29830NANA2+17736150..17737987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g29840OsAffx.24501.1.S1_at11/112+17738259..17739089hypothetical protein
LOC_Os02g29850OsAffx.27854.1.S1_at9/112+17739944..17744101hypothetical protein
LOC_Os02g29850OsAffx.14826.1.S1_at1/112+17739944..17744101hypothetical protein
LOC_Os02g29860OsAffx.12282.1.S1_at11/112+17748945..17750571hypothetical protein
LOC_Os02g29870Os.54691.1.S1_x_at4/112+17754217..17762511Zinc knuckle family protein
LOC_Os02g29870OsAffx.26095.1.S1_at1/112+17754217..17762511Zinc knuckle family protein
LOC_Os02g29880OsAffx.8602.1.S1_x_at4/112+17764546..17767870retrotransposon protein, putative, unclassified
LOC_Os02g29880Os.46735.1.S1_at2/112+17764546..17767870retrotransposon protein, putative, unclassified
LOC_Os02g29880OsAffx.8602.1.S1_s_at1/112+17764546..17767870retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27854.1.S1_at--724--5251Chr02:17740644..17740668 (25 bp)
GAATCTCTAGAGTCTTGTCTGATCA
LOC_Os02g29850
OsAffx.27854.1.S1_at--307--6075Chr11:11525730..11525754 (25 bp)
GAGTTCTCAAGCACGAGTCACACTG
NONE
OsAffx.27854.1.S1_at--532--232Chr10:22521792..22521811 (20 bp)
ATATCACCTCTCAAGGTGCACGGAA
NONE
OsAffx.27854.1.S1_at--1092--2211Chr02:17742503..17742527 (25 bp)
ACAATAACCTCAACATTCGTACCAC
LOC_Os02g29850
OsAffx.27854.1.S1_at--832--1836Chr02:17742526..17742550 (25 bp)
ACGCTCCTTGGACTATGAGAAGACA
LOC_Os02g29850
OsAffx.27854.1.S1_at--367--5374Chr02:17742544..17742568 (25 bp)
GAAGACAGATGCTCAGGGAACCAGG
LOC_Os02g29850
OsAffx.27854.1.S1_at--1136--8674Chr02:17742586..17742610 (25 bp)
TGTGTTGCATTCTTGCATCCGAATC
LOC_Os02g29850
OsAffx.27854.1.S1_at--270--2692Chr11:9872114..9872479 (25 bp)
AAGCTTGTAGCCAGAACCGAGTCCT
NONE
OsAffx.27854.1.S1_at--922--1135Chr02:17742998..17743022 (25 bp)
AGTCCTGGCTGGGTCGGTTGAACCA
LOC_Os02g29850
OsAffx.27854.1.S1_at--71--9434Chr09:3294327..3294346 (20 bp)
TCGGTTGAACCAAGTGTTCGCCCAA
NONE
OsAffx.27854.1.S1_at--752--571NONE
ATCCTTCGCCGTATGGTCAGGTATG
NONE
Target Sequence 
GAATCTCTAGAGTCTTGTCTGATCAGTGCCGCTTCTTCGTGCGAGGACCACAACCACCTTATGCGAGATGTCTCCATGGT
CGAGCCTGTGACCAAAAACAAAGCACTGTCGGGAGATACCCCAGATTATCTTGGAAATCATTTCAATTTAACGGATGAGT
TCTCAAGCACGAGTCACACTGGAGGTAAGTTAAGGGCCAGGAACAAATCAATTGCCAAAACAGGCAAAGGAGAAACATAT
CACCTCTCAAGGTGCACGGAAATATGTACAATAACCTCAACATTCGTACCACGCTCCTTGGACTATGAGAAGACAGATGC
TCAGGGAACCAGGCAGAACAAATGCAAAGTTGTGTTGCATTCTTGCATCCGAATCAAAGCTTGTAGCCAGAACCGAGTCC
TGGCTGGGTCGGTTGAACCAAGTGTTCGCCCAACCCTTGCCTGGCTCGGTACTGTCATCCTTCGCCGTATGGTCAGGTAT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis