Browse Element(s) Details


OsAffx.2791.1.S1_at

Description tigr:9630.m02798
TID=OsAffx.2791.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2931011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29270NANA2+17384524..17385650hypothetical protein
LOC_Os02g29280Os.54691.1.S1_x_at3/112+17387559..17392310retrotransposon protein, putative, unclassified
LOC_Os02g29280OsAffx.10222.1.S1_at1/112+17387559..17392310retrotransposon protein, putative, unclassified
LOC_Os02g29280OsAffx.10222.1.S1_x_at1/112+17387559..17392310retrotransposon protein, putative, unclassified
LOC_Os02g29290NANA2+17397604..17398845hypothetical protein
LOC_Os02g29300Os.27557.1.S1_at10/112+17400342..17405250expressed protein
LOC_Os02g29310OsAffx.2791.1.S1_at11/112+17409434..17409856hypothetical protein
LOC_Os02g29320OsAffx.2792.1.S1_s_at11/112+17410542..17413326expressed protein
LOC_Os02g29330OsAffx.22940.2.S1_s_at11/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.1.S1_s_at11/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.5.S1_x_at10/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.5.S1_at10/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.3.S1_x_at9/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.2.S1_at8/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330Os.35344.3.S1_x_at8/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330Os.35344.18.S1_x_at6/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.31552.2.S1_at1/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29340Os.25221.1.S1_at11/112+17422161..17425495HSF-type DNA-binding domain containing protein, expressed
LOC_Os02g29350OsAffx.12270.1.S1_at9/112+17429981..17431271hypothetical protein
LOC_Os02g29360Os.8066.1.S1_at2/112+17433950..17435646expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2791.1.S1_at--685--10351Chr02:17409763..17409787 (25 bp)
TTTTTTGTTCACGTTGGCCGGAGCG
LOC_Os02g29310
OsAffx.2791.1.S1_at--328--10291Chr02:17409701..17409725 (25 bp)
TTTCTCTCCCCATGTTCACTTCGAG
LOC_Os02g29310
OsAffx.2791.1.S1_at--7--9331Chr02:17409675..17409699 (25 bp)
TCGCCGACAAGATGAGAACTTTTCA
LOC_Os02g29310
OsAffx.2791.1.S1_at--420--10271Chr02:17409655..17409679 (25 bp)
TTTCAGTGGGCAGGGTCGACTTCTC
LOC_Os02g29310
OsAffx.2791.1.S1_at--175--1111Chr02:17409651..17409675 (25 bp)
AGTGGGCAGGGTCGACTTCTCTTCC
LOC_Os02g29310
OsAffx.2791.1.S1_at--928--3531Chr02:17409585..17409609 (25 bp)
CATCCCGTCGGAGGAAGTCAGGCGG
LOC_Os02g29310
OsAffx.2791.1.S1_at--49--10051Chr02:17409542..17409566 (25 bp)
TAGTCGGAGTAGTAGCGCTGGCTCT
LOC_Os02g29310
OsAffx.2791.1.S1_at--428--1191Chr02:17409532..17409556 (25 bp)
AGTAGCGCTGGCTCTGGGATCTGCT
LOC_Os02g29310
OsAffx.2791.1.S1_at--876--1651Chr02:17409529..17409553 (25 bp)
AGCGCTGGCTCTGGGATCTGCTCCG
LOC_Os02g29310
OsAffx.2791.1.S1_at--1009--9291Chr02:17409508..17409532 (25 bp)
TCCGCCCGAGCCACGACGGATGAAG
LOC_Os02g29310
OsAffx.2791.1.S1_at--89--5871Chr02:17409501..17409525 (25 bp)
GAGCCACGACGGATGAAGTCGAGCA
LOC_Os02g29310
Target Sequence 
TTTTTTGTTCACGTTGGCCGGAGCGGCGGCGGTGGAGAGCGGTGCCCGACGACGGCCTCCATTTTCTCTCCCCATGTTCA
CTTCGAGCTCGCCGACAAGATGAGAACTTTTCAGTGGGCAGGGTCGACTTCTCTTCCTTCCCCTCCATCAATCACTGTCC
CAGTGTCCCTCCTCTCCACATCCCGTCGGAGGAAGTCAGGCGGCGGTGGCAGTGGGGAGGGTAGTCGGAGTAGTAGCGCT
GGCTCTGGGATCTGCTCCGCCCGAGCCACGACGGATGAAGTCGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis