Browse Element(s) Details


Os.8066.1.S1_at

Description gb:AK069861.1
DB_XREF= gi:32979885
TID=Os.8066.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8066 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038A06, full insert sequence.
FL= gb:AK069861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g293602/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29310OsAffx.2791.1.S1_at11/112+17409434..17409856hypothetical protein
LOC_Os02g29320OsAffx.2792.1.S1_s_at11/112+17410542..17413326expressed protein
LOC_Os02g29330OsAffx.22940.2.S1_s_at11/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.1.S1_s_at11/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.5.S1_x_at10/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.5.S1_at10/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.3.S1_x_at9/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.2.S1_at8/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330Os.35344.3.S1_x_at8/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330Os.35344.18.S1_x_at6/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.31552.2.S1_at1/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29340Os.25221.1.S1_at11/112+17422161..17425495HSF-type DNA-binding domain containing protein, expressed
LOC_Os02g29350OsAffx.12270.1.S1_at9/112+17429981..17431271hypothetical protein
LOC_Os02g29360Os.8066.1.S1_at2/112+17433950..17435646expressed protein
LOC_Os02g29370NANA2+17437564..17439723transposon protein, putative, Mariner sub-class, expressed
LOC_Os02g29380Os.11879.1.S1_at11/112+17440484..17449287expressed protein
LOC_Os02g29390OsAffx.12271.1.S1_at11/112+17450426..17451311hypothetical protein
LOC_Os02g29390OsAffx.2664.1.S1_at1/112+17450426..17451311hypothetical protein
LOC_Os02g29390Os.52777.1.S1_s_at1/112+17450426..17451311hypothetical protein
LOC_Os02g29400Os.6440.1.S1_at11/112+17458157..17458759Mitochondrial import receptor subunit TOM22 homolog, putative, expressed
LOC_Os02g29410OsAffx.30515.3.S1_at9/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.4.S1_x_at4/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.1.S1_x_at3/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.2.S1_x_at2/112+17459494..17467741hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8066.1.S1_at--440--731Chr02:17435602..17435626 (25 bp)
ATGTTGAGGCTTTTACTCCCAGCCT
LOC_Os02g29360
Os.8066.1.S1_at--364--1691Chr02:17435622..17435646 (25 bp)
AGCCTACTTCACCATACGTCACTAA
LOC_Os02g29360
Os.8066.1.S1_at--160--9931Chr02:17435636..17435660 (25 bp)
TACGTCACTAAGGATATGCATTGTC
NONE
Os.8066.1.S1_at--422--10131Chr02:17435650..17435674 (25 bp)
TATGCATTGTCGGAGTAGTAGTACT
NONE
Os.8066.1.S1_at--169--9971Chr02:17435674..17435698 (25 bp)
TACCAGTACAAGTATTAGTAGCAGT
NONE
Os.8066.1.S1_at--48--6091Chr02:17435711..17435735 (25 bp)
GAGTAGGAGTAGTATTTGTAGCAAT
NONE
Os.8066.1.S1_at--7--7371Chr02:17435741..17435765 (25 bp)
GTGACTAATTAGGAGATCATGGCTA
NONE
Os.8066.1.S1_at--1006--851Chr02:17435759..17435783 (25 bp)
ATGGCTAAAAATATGGAATGCTCTT
NONE
Os.8066.1.S1_at--435--3851Chr02:17435788..17435812 (25 bp)
CTGAACTACTATGATGTGGATGGAT
NONE
Os.8066.1.S1_at--776--8552Chr02:17435838..17435862 (25 bp)
TGGAGTAGCATATGTGCCCTTCTCT
NONE
Os.8066.1.S1_at--616--4311Chr02:17435855..17435879 (25 bp)
CCTTCTCTCTCTGTAAGCATGGGAT
NONE
Target Sequence 
ATGTTGAGGCTTTTACTCCCAGCCTACTTCACCATACGTCACTAAGGATATGCATTGTCGGAGTAGTAGTACTACCAGTA
CAAGTATTAGTAGCAGTAGTATTAGTATTGAGTAGGAGTAGTATTTGTAGCAATGTTAGGTGACTAATTAGGAGATCATG
GCTAAAAATATGGAATGCTCTTTTGGCTGAACTACTATGATGTGGATGGATGGTCTGAACATGTAACAAATGAAAATGGA
GTAGCATATGTGCCCTTCTCTCTCTGTAAGCATGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8066.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis