Browse Element(s) Details


OsAffx.30515.3.S1_at

Description tigr:9630.m02808
TID=OsAffx.30515.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g294109/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29360Os.8066.1.S1_at2/112+17433950..17435646expressed protein
LOC_Os02g29370NANA2+17437564..17439723transposon protein, putative, Mariner sub-class, expressed
LOC_Os02g29380Os.11879.1.S1_at11/112+17440484..17449287expressed protein
LOC_Os02g29390OsAffx.12271.1.S1_at11/112+17450426..17451311hypothetical protein
LOC_Os02g29390OsAffx.2664.1.S1_at1/112+17450426..17451311hypothetical protein
LOC_Os02g29390Os.52777.1.S1_s_at1/112+17450426..17451311hypothetical protein
LOC_Os02g29400Os.6440.1.S1_at11/112+17458157..17458759Mitochondrial import receptor subunit TOM22 homolog, putative, expressed
LOC_Os02g29410OsAffx.30515.3.S1_at9/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.4.S1_x_at4/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.1.S1_x_at3/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.2.S1_x_at2/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29420OsAffx.24493.1.S1_at11/112+17472302..17475239hypothetical protein
LOC_Os02g29420OsAffx.16522.1.S1_at1/112+17472302..17475239hypothetical protein
LOC_Os02g29420Os.38764.1.S1_x_at1/112+17472302..17475239hypothetical protein
LOC_Os02g29430OsAffx.7693.1.S1_x_at1/112+17477770..17478036hypothetical protein
LOC_Os02g29440OsAffx.12273.1.S1_at10/112+17479048..17479951hypothetical protein
LOC_Os02g29450NANA2+17482176..17482637hypothetical protein
LOC_Os02g29464Os.54878.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464Os.7297.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464Os.32034.1.A1_s_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464OsAffx.12275.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464OsAffx.12275.1.S1_x_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30515.3.S1_at--1038--8331Chr02:17462990..17463014 (25 bp)
GGCGAAAACCCTAGGCACGACACGA
LOC_Os02g29410
OsAffx.30515.3.S1_at--636--1851NONE
ACGACACGACTCCTCAGGGTTGTCG
NONE
OsAffx.30515.3.S1_at--958--7911Chr02:17461303..17461327 (25 bp)
GGTTGTCGATGCTCTACAAGATCCA
LOC_Os02g29410
OsAffx.30515.3.S1_at--791--10871Chr02:17461267..17461291 (25 bp)
TTGGCTGGGCAACGACATCGACACA
LOC_Os02g29410
OsAffx.30515.3.S1_at--1045--2091Chr02:17461253..17461277 (25 bp)
ACATCGACACATTACCGCAGGTTGG
LOC_Os02g29410
OsAffx.30515.3.S1_at--847--9753Chr07:19234892..19234911 (20 bp)
TAATCCAGAGGACCAACCCGACAAG
NONE
OsAffx.30515.3.S1_at--885--7611Chr02:17461178..17461202 (25 bp)
GGGAAGAGGCTACCCAATCTCACAT
LOC_Os02g29410
OsAffx.30515.3.S1_at--827--451Chr02:17460766..17461186 (25 bp)
ATCTCACATCATCAACACGGGAGTG
LOC_Os02g29410
OsAffx.30515.3.S1_at--702--6251NONE
GATGGGCAGCAGTCATATTCGCAGA
NONE
OsAffx.30515.3.S1_at--867--1911Chr02:17459621..17459645 (25 bp)
ACGGGCAGCTTGAGCTTGCGAAGCA
LOC_Os02g29410
OsAffx.30515.3.S1_at--687--4251Chr02:17459574..17459598 (25 bp)
CCGGGCAGCTTGAGCTTGCGAAGCA
LOC_Os02g29410
Target Sequence 
GGCGAAAACCCTAGGCACGACACGACTCCTCAGGGTTGTCGATGCTCTACAAGATCCACCCTCACCGCCTTGGCTGGGCA
ACGACATCGACACATTACCGCAGGTTGGTAATCCAGAGGACCAACCCGACAAGGCACGGGAGAGGCCTTCGACTGACAGG
GAAGAGGCTACCCAATCTCACATCATCAACACGGGAGTGAAGTCTGAAGAGATGGGCAGCAGTCATATTCGCAGATTACA
AACTTTATACAAACAACAGGGAGCAAGAGACGGGCAGCTTGAGCTTGCGAAGCACTCAGAAGGCCTCGGCCATGAGCCGG
GCAGCTTGAGCTTGCGAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30515.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis