Browse Element(s) Details


OsAffx.12273.1.S1_at

Description tigr:9630.m02811
TID=OsAffx.12273.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2944010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29400Os.6440.1.S1_at11/112+17458157..17458759Mitochondrial import receptor subunit TOM22 homolog, putative, expressed
LOC_Os02g29410OsAffx.30515.3.S1_at9/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.4.S1_x_at4/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.1.S1_x_at3/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.2.S1_x_at2/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29420OsAffx.24493.1.S1_at11/112+17472302..17475239hypothetical protein
LOC_Os02g29420OsAffx.16522.1.S1_at1/112+17472302..17475239hypothetical protein
LOC_Os02g29420Os.38764.1.S1_x_at1/112+17472302..17475239hypothetical protein
LOC_Os02g29430OsAffx.7693.1.S1_x_at1/112+17477770..17478036hypothetical protein
LOC_Os02g29440OsAffx.12273.1.S1_at10/112+17479048..17479951hypothetical protein
LOC_Os02g29450NANA2+17482176..17482637hypothetical protein
LOC_Os02g29464Os.54878.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464Os.7297.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464Os.32034.1.A1_s_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464OsAffx.12275.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464OsAffx.12275.1.S1_x_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29480Os.8040.1.S1_a_at11/112+17504445..17509854Nuclear transport factor 2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12273.1.S1_at--1056--2811Chr02:17479894..17479918 (25 bp)
AAGTTGGAGCTTCGCGCGACAGCCA
LOC_Os02g29440
OsAffx.12273.1.S1_at--591--9331Chr02:17479883..17479907 (25 bp)
TCGCGCGACAGCCAACAAGGGTAGT
LOC_Os02g29440
OsAffx.12273.1.S1_at--604--3371Chr02:17479875..17479899 (25 bp)
CAGCCAACAAGGGTAGTGTCAGCAA
LOC_Os02g29440
OsAffx.12273.1.S1_at--1047--1051Chr02:17479866..17479890 (25 bp)
AGGGTAGTGTCAGCAAGGATTCCCC
LOC_Os02g29440
OsAffx.12273.1.S1_at--593--7451Chr02:17479860..17479884 (25 bp)
GTGTCAGCAAGGATTCCCCCGTAAT
LOC_Os02g29440
OsAffx.12273.1.S1_at--726--4231Chr02:17479842..17479866 (25 bp)
CCGTAATCCGAAGTCCGAAGCAATT
LOC_Os02g29440
OsAffx.12273.1.S1_at--539--7251NONE
GTCCGAAGCAATTGGTAGATGTGTA
NONE
OsAffx.12273.1.S1_at--238--5371Chr02:17479212..17479236 (25 bp)
GAAGAGCCAGAAATTATTGATTTGT
LOC_Os02g29440
OsAffx.12273.1.S1_at--656--10231Chr02:17479198..17479222 (25 bp)
TATTGATTTGTGTGATGGGTCAGAT
LOC_Os02g29440
OsAffx.12273.1.S1_at--523--6311Chr02:17479173..17479197 (25 bp)
GATGACAGTGATTATGAGGCATACA
LOC_Os02g29440
OsAffx.12273.1.S1_at--64--2311Chr02:17479080..17479104 (25 bp)
AAAGGAGTTACTAAGGCTGCTGGTA
LOC_Os02g29440
Target Sequence 
AAGTTGGAGCTTCGCGCGACAGCCAACAAGGGTAGTGTCAGCAAGGATTCCCCCGTAATCCGAAGTCCGAAGCAATTGGT
AGATGTGTATGTTGAAGAGCCAGAAATTATTGATTTGTGTGATGGGTCAGATGATGACAGTGATTATGAGGCATACATGG
AATTAAAAATGGACAGTGAAGAAGAGTGTGCAAAAAAGGATGTTGAAGTAGATGTATCCAAAGGTAAAGGAGTTACTAAG
GCTGCTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis